miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26623 3' -52.4 NC_005357.1 + 14970 0.77 0.198652
Target:  5'- gGCGGCGcGCuGGCAUACCaGCGCCAg -3'
miRNA:   3'- aUGUUGUaCG-CCGUAUGGaUGCGGUg -5'
26623 3' -52.4 NC_005357.1 + 36531 0.67 0.661104
Target:  5'- gGCGGCAcacucaccacGCuGGCG-ACCUAUGCCACu -3'
miRNA:   3'- aUGUUGUa---------CG-CCGUaUGGAUGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 13854 0.67 0.672721
Target:  5'- cGCuGCcgGUGGCcgACgUgcGCGCCGCg -3'
miRNA:   3'- aUGuUGuaCGCCGuaUGgA--UGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 9232 0.66 0.773743
Target:  5'- cGCGAUAgccaGCGGUggccGUGCCgaggGCGcCCACu -3'
miRNA:   3'- aUGUUGUa---CGCCG----UAUGGa---UGC-GGUG- -5'
26623 3' -52.4 NC_005357.1 + 26685 0.72 0.37764
Target:  5'- aACGAgGUGCGGUAUgucgagcgcaugGCCUcGCGCCAg -3'
miRNA:   3'- aUGUUgUACGCCGUA------------UGGA-UGCGGUg -5'
26623 3' -52.4 NC_005357.1 + 23022 0.71 0.426366
Target:  5'- gACAGCAUGgGGaugcuggaaACCUACGCCGa -3'
miRNA:   3'- aUGUUGUACgCCgua------UGGAUGCGGUg -5'
26623 3' -52.4 NC_005357.1 + 4410 0.7 0.478636
Target:  5'- cUugAGCGUGCGGCAgucguaggucgUACCcg-GCCGCa -3'
miRNA:   3'- -AugUUGUACGCCGU-----------AUGGaugCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 35810 0.7 0.500414
Target:  5'- cGCGAagcugGCGGCGga-CUACGCCAUg -3'
miRNA:   3'- aUGUUgua--CGCCGUaugGAUGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 8000 0.69 0.579604
Target:  5'- cACGGCGU-CGGaCGUGCCcuugGCGCCAg -3'
miRNA:   3'- aUGUUGUAcGCC-GUAUGGa---UGCGGUg -5'
26623 3' -52.4 NC_005357.1 + 210 0.68 0.649456
Target:  5'- aGCAuCAUgGUGGCGUAggUAUGCCGCa -3'
miRNA:   3'- aUGUuGUA-CGCCGUAUggAUGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 37170 0.68 0.626119
Target:  5'- -uCAACAcgGUGGCcgGUGCCaACGCCAa -3'
miRNA:   3'- auGUUGUa-CGCCG--UAUGGaUGCGGUg -5'
26623 3' -52.4 NC_005357.1 + 29227 0.7 0.533863
Target:  5'- aAgAACAUGCaGGCGUACa-ACGCCGg -3'
miRNA:   3'- aUgUUGUACG-CCGUAUGgaUGCGGUg -5'
26623 3' -52.4 NC_005357.1 + 29089 0.75 0.262249
Target:  5'- cGCGACuucgGCGGCGaccugccgaaaGCCUACGCCGCc -3'
miRNA:   3'- aUGUUGua--CGCCGUa----------UGGAUGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 27579 0.68 0.63779
Target:  5'- -cCAGCGUGCGGC--GCUggcCGCCAa -3'
miRNA:   3'- auGUUGUACGCCGuaUGGau-GCGGUg -5'
26623 3' -52.4 NC_005357.1 + 14586 0.75 0.28432
Target:  5'- cUugAGCA-GCGGCGcgGCCgGCGCCACc -3'
miRNA:   3'- -AugUUGUaCGCCGUa-UGGaUGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 36032 0.7 0.522618
Target:  5'- cGCGACuacaccggGcCGGCcgGCCUGCGCCu- -3'
miRNA:   3'- aUGUUGua------C-GCCGuaUGGAUGCGGug -5'
26623 3' -52.4 NC_005357.1 + 14349 0.68 0.63779
Target:  5'- aUACGACGccGCGGCc-ACCUGC-CCGCu -3'
miRNA:   3'- -AUGUUGUa-CGCCGuaUGGAUGcGGUG- -5'
26623 3' -52.4 NC_005357.1 + 34159 0.67 0.672721
Target:  5'- gAUAGCGUGCGuCAgaucgaacACCUGgGCCGCu -3'
miRNA:   3'- aUGUUGUACGCcGUa-------UGGAUgCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 26290 0.73 0.359226
Target:  5'- -uCAGCGUGCGGCcgcaguCCUACGUCGg -3'
miRNA:   3'- auGUUGUACGCCGuau---GGAUGCGGUg -5'
26623 3' -52.4 NC_005357.1 + 7537 0.71 0.467923
Target:  5'- gUGCGcUcgGCGGCGUGCUcgauccgcgGCGCCACc -3'
miRNA:   3'- -AUGUuGuaCGCCGUAUGGa--------UGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.