miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26623 3' -52.4 NC_005357.1 + 42275 0.66 0.752096
Target:  5'- cGCAuccGCcUGCGGgGaaGCCUgGCGCCACg -3'
miRNA:   3'- aUGU---UGuACGCCgUa-UGGA-UGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 42207 1.07 0.001472
Target:  5'- cUACAACAUGCGGCAUACCUACGCCACc -3'
miRNA:   3'- -AUGUUGUACGCCGUAUGGAUGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 42091 0.66 0.773743
Target:  5'- gGCGagcACGUGUGGCAcgACCcccggUACGgCACg -3'
miRNA:   3'- aUGU---UGUACGCCGUa-UGG-----AUGCgGUG- -5'
26623 3' -52.4 NC_005357.1 + 41732 0.67 0.672721
Target:  5'- gGCggUAUcuuggGCGGCccgGCCgGCGCCGCc -3'
miRNA:   3'- aUGuuGUA-----CGCCGua-UGGaUGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 39842 0.69 0.545192
Target:  5'- uUGCAACAggGCGGCAaGCgcGCGCaCGCg -3'
miRNA:   3'- -AUGUUGUa-CGCCGUaUGgaUGCG-GUG- -5'
26623 3' -52.4 NC_005357.1 + 37282 0.67 0.695814
Target:  5'- aGCAGCGa-CGGCc-GCCUGCGCgGCa -3'
miRNA:   3'- aUGUUGUacGCCGuaUGGAUGCGgUG- -5'
26623 3' -52.4 NC_005357.1 + 37170 0.68 0.626119
Target:  5'- -uCAACAcgGUGGCcgGUGCCaACGCCAa -3'
miRNA:   3'- auGUUGUa-CGCCG--UAUGGaUGCGGUg -5'
26623 3' -52.4 NC_005357.1 + 37074 0.68 0.614453
Target:  5'- cGCGguGCAgGCGGCcacgcagcgcgAUGCCaugcUGCGCCACg -3'
miRNA:   3'- aUGU--UGUaCGCCG-----------UAUGG----AUGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 36967 0.67 0.703836
Target:  5'- aACGACc-GCGGCGUgauggucgauaccgACCUcgcccACGCCGCc -3'
miRNA:   3'- aUGUUGuaCGCCGUA--------------UGGA-----UGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 36531 0.67 0.661104
Target:  5'- gGCGGCAcacucaccacGCuGGCG-ACCUAUGCCACu -3'
miRNA:   3'- aUGUUGUa---------CG-CCGUaUGGAUGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 36245 0.7 0.511466
Target:  5'- cUGCaAACGcUGCGGCAagaccgGCCUGCGCUg- -3'
miRNA:   3'- -AUG-UUGU-ACGCCGUa-----UGGAUGCGGug -5'
26623 3' -52.4 NC_005357.1 + 36032 0.7 0.522618
Target:  5'- cGCGACuacaccggGcCGGCcgGCCUGCGCCu- -3'
miRNA:   3'- aUGUUGua------C-GCCGuaUGGAUGCGGug -5'
26623 3' -52.4 NC_005357.1 + 35961 0.7 0.489469
Target:  5'- cGCGGCGUGCaGUu--CCUGCGCgACg -3'
miRNA:   3'- aUGUUGUACGcCGuauGGAUGCGgUG- -5'
26623 3' -52.4 NC_005357.1 + 35810 0.7 0.500414
Target:  5'- cGCGAagcugGCGGCGga-CUACGCCAUg -3'
miRNA:   3'- aUGUUgua--CGCCGUaugGAUGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 34159 0.67 0.672721
Target:  5'- gAUAGCGUGCGuCAgaucgaacACCUGgGCCGCu -3'
miRNA:   3'- aUGUUGUACGCcGUa-------UGGAUgCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 33960 0.66 0.729899
Target:  5'- -uCGGC-UGCGGCAUcgcaggccACCUcgACGCCGa -3'
miRNA:   3'- auGUUGuACGCCGUA--------UGGA--UGCGGUg -5'
26623 3' -52.4 NC_005357.1 + 33893 0.72 0.387082
Target:  5'- cGCGGC-UGuCGaGCGUuucaucGCCUACGCCACg -3'
miRNA:   3'- aUGUUGuAC-GC-CGUA------UGGAUGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 33814 0.66 0.773743
Target:  5'- aAgGGCGUacCGGCcacGCCUACGCCAUc -3'
miRNA:   3'- aUgUUGUAc-GCCGua-UGGAUGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 33732 0.66 0.74106
Target:  5'- gGCAGCAaucugcGCGGCGcacACCUGgGCgGCg -3'
miRNA:   3'- aUGUUGUa-----CGCCGUa--UGGAUgCGgUG- -5'
26623 3' -52.4 NC_005357.1 + 33640 0.67 0.707263
Target:  5'- -cCGGC--GCGGCcgACCcaucgUGCGCCGCg -3'
miRNA:   3'- auGUUGuaCGCCGuaUGG-----AUGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.