miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26631 3' -68.1 NC_005808.1 + 7636 0.67 0.136081
Target:  5'- gGGcGCGGCUCGacccacGCCGGCuCCuuGCCGUAc -3'
miRNA:   3'- -CC-CGCCGGGC------CGGCCGcGG--CGGCAUc -5'
26631 3' -68.1 NC_005808.1 + 874 0.67 0.136081
Target:  5'- cGGCaagGGCUgGGCgCGGCGCguCGCCGg-- -3'
miRNA:   3'- cCCG---CCGGgCCG-GCCGCG--GCGGCauc -5'
26631 3' -68.1 NC_005808.1 + 21822 0.67 0.137495
Target:  5'- cGGGCGGCCuguccuauguggacgCGGCC-GCGCCcaaCgGUGGc -3'
miRNA:   3'- -CCCGCCGG---------------GCCGGcCGCGGc--GgCAUC- -5'
26631 3' -68.1 NC_005808.1 + 27441 0.67 0.139282
Target:  5'- cGGCGGCCgcaGGCCcuGGCGCugguaugccagcgCGCCGc-- -3'
miRNA:   3'- cCCGCCGGg--CCGG--CCGCG-------------GCGGCauc -5'
26631 3' -68.1 NC_005808.1 + 34449 0.67 0.139642
Target:  5'- uGGCGGCCaGuuCGuGCGCgGCCGUGc -3'
miRNA:   3'- cCCGCCGGgCcgGC-CGCGgCGGCAUc -5'
26631 3' -68.1 NC_005808.1 + 24641 0.67 0.139642
Target:  5'- cGGaCGGCCCgaccguGGCCGGCcUCGCCa--- -3'
miRNA:   3'- cCC-GCCGGG------CCGGCCGcGGCGGcauc -5'
26631 3' -68.1 NC_005808.1 + 13506 0.67 0.143287
Target:  5'- aGGCcGCCaaGCUGGCGggcCUGCCGUGGg -3'
miRNA:   3'- cCCGcCGGgcCGGCCGC---GGCGGCAUC- -5'
26631 3' -68.1 NC_005808.1 + 27770 0.67 0.143287
Target:  5'- cGGCGGCgagCCGcuGCCGGCGCgCgGCCuGUAu -3'
miRNA:   3'- cCCGCCG---GGC--CGGCCGCG-G-CGG-CAUc -5'
26631 3' -68.1 NC_005808.1 + 23739 0.67 0.14702
Target:  5'- cGGUGGCgCGcagcagcgccauGCCGGCGCCaCCGg-- -3'
miRNA:   3'- cCCGCCGgGC------------CGGCCGCGGcGGCauc -5'
26631 3' -68.1 NC_005808.1 + 4531 0.67 0.14702
Target:  5'- uGGCGuGCUgGGCgGucGUGCCGCCGcGGa -3'
miRNA:   3'- cCCGC-CGGgCCGgC--CGCGGCGGCaUC- -5'
26631 3' -68.1 NC_005808.1 + 10762 0.67 0.14702
Target:  5'- --uCGGCCgaGGCCGugcGCGCUGCCGUcaAGa -3'
miRNA:   3'- cccGCCGGg-CCGGC---CGCGGCGGCA--UC- -5'
26631 3' -68.1 NC_005808.1 + 21772 0.67 0.14702
Target:  5'- aGGCcGCCCGGCaCGGUGCUGauGUc- -3'
miRNA:   3'- cCCGcCGGGCCG-GCCGCGGCggCAuc -5'
26631 3' -68.1 NC_005808.1 + 25693 0.66 0.150841
Target:  5'- aGGUGGacgcgcugCUGGCgaccGCGCCGCCGUGGu -3'
miRNA:   3'- cCCGCCg-------GGCCGgc--CGCGGCGGCAUC- -5'
26631 3' -68.1 NC_005808.1 + 3746 0.66 0.154752
Target:  5'- uGGUGGgCaC-GUCGGUGCCGCCGcUGGa -3'
miRNA:   3'- cCCGCCgG-GcCGGCCGCGGCGGC-AUC- -5'
26631 3' -68.1 NC_005808.1 + 29403 0.66 0.154752
Target:  5'- uGGUucgaGGaCuuGGCCGGCGaCCGCCa--- -3'
miRNA:   3'- cCCG----CC-GggCCGGCCGC-GGCGGcauc -5'
26631 3' -68.1 NC_005808.1 + 11654 0.66 0.154752
Target:  5'- cGGCGGCCa-GCCGGCgGCC-CUGg-- -3'
miRNA:   3'- cCCGCCGGgcCGGCCG-CGGcGGCauc -5'
26631 3' -68.1 NC_005808.1 + 25308 0.66 0.158754
Target:  5'- cGGcCGGCCCuGCCaccGGCGCucguCGCCGg-- -3'
miRNA:   3'- cCC-GCCGGGcCGG---CCGCG----GCGGCauc -5'
26631 3' -68.1 NC_005808.1 + 16067 0.66 0.158754
Target:  5'- -cGUGGCC--GCCGcGCGCggCGCCGUAGa -3'
miRNA:   3'- ccCGCCGGgcCGGC-CGCG--GCGGCAUC- -5'
26631 3' -68.1 NC_005808.1 + 28672 0.66 0.158754
Target:  5'- cGGCGGCCUcGCCaGCGCgGCgCGc-- -3'
miRNA:   3'- cCCGCCGGGcCGGcCGCGgCG-GCauc -5'
26631 3' -68.1 NC_005808.1 + 11911 0.66 0.158754
Target:  5'- gGGGUucGCCCaGGCCaaccgcGGCGCgGCCGg-- -3'
miRNA:   3'- -CCCGc-CGGG-CCGG------CCGCGgCGGCauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.