miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26631 3' -68.1 NC_005808.1 + 13324 0.69 0.094311
Target:  5'- aGGCGGCguaggcuuUCGGCaGGuCGCCGCCGa-- -3'
miRNA:   3'- cCCGCCG--------GGCCGgCC-GCGGCGGCauc -5'
26631 3' -68.1 NC_005808.1 + 37856 0.69 0.094311
Target:  5'- aGGCcagcuuguagaGGUCgGgGCCGGCGCCGUCGUc- -3'
miRNA:   3'- cCCG-----------CCGGgC-CGGCCGCGGCGGCAuc -5'
26631 3' -68.1 NC_005808.1 + 24575 0.69 0.096841
Target:  5'- aGGcCGGCCaCGGUCGG-GCCGuCCGgcGu -3'
miRNA:   3'- cCC-GCCGG-GCCGGCCgCGGC-GGCauC- -5'
26631 3' -68.1 NC_005808.1 + 27406 0.69 0.102904
Target:  5'- aGGuCGGCCCGGCCuacguggaaagcaacGcGCGCCugugggcGUCGUGGg -3'
miRNA:   3'- cCC-GCCGGGCCGG---------------C-CGCGG-------CGGCAUC- -5'
26631 3' -68.1 NC_005808.1 + 12092 0.68 0.107613
Target:  5'- uGGGCaagaccucgccGGCCaCGGCC-GCGCUGCUGg-- -3'
miRNA:   3'- -CCCG-----------CCGG-GCCGGcCGCGGCGGCauc -5'
26631 3' -68.1 NC_005808.1 + 1314 0.68 0.107613
Target:  5'- aGGGCgacGGCCaccaGGCCGacaaGCGCgaggaaGCCGUGGu -3'
miRNA:   3'- -CCCG---CCGGg---CCGGC----CGCGg-----CGGCAUC- -5'
26631 3' -68.1 NC_005808.1 + 13187 0.68 0.110477
Target:  5'- uGGGC-GCCCuuGGCCGGCGUuguaCGCCu--- -3'
miRNA:   3'- -CCCGcCGGG--CCGGCCGCG----GCGGcauc -5'
26631 3' -68.1 NC_005808.1 + 25507 0.68 0.116116
Target:  5'- aGGGUcaGGCCCgcgaugaGGUCGGUuuuGCCGCCGc-- -3'
miRNA:   3'- -CCCG--CCGGG-------CCGGCCG---CGGCGGCauc -5'
26631 3' -68.1 NC_005808.1 + 40794 0.68 0.119502
Target:  5'- aGGUucaGCCCguGGCCGGCGCUgGCCGg-- -3'
miRNA:   3'- cCCGc--CGGG--CCGGCCGCGG-CGGCauc -5'
26631 3' -68.1 NC_005808.1 + 18465 0.68 0.119502
Target:  5'- -cGCGGCgCCGG-CGGCGUCgGCCGa-- -3'
miRNA:   3'- ccCGCCG-GGCCgGCCGCGG-CGGCauc -5'
26631 3' -68.1 NC_005808.1 + 40573 0.68 0.12266
Target:  5'- aGGCGGCCgGuauGCCGGUGCUGgUGgcGu -3'
miRNA:   3'- cCCGCCGGgC---CGGCCGCGGCgGCauC- -5'
26631 3' -68.1 NC_005808.1 + 19872 0.68 0.12266
Target:  5'- cGGGCGuGCCgaaGGCguCGcGCGCCuucuugGCCGUGGc -3'
miRNA:   3'- -CCCGC-CGGg--CCG--GC-CGCGG------CGGCAUC- -5'
26631 3' -68.1 NC_005808.1 + 34494 0.67 0.125896
Target:  5'- -uGCGGCCCaGGaaGGCGCUGgCGUc- -3'
miRNA:   3'- ccCGCCGGG-CCggCCGCGGCgGCAuc -5'
26631 3' -68.1 NC_005808.1 + 25801 0.67 0.127212
Target:  5'- cGGCGcGCUCGGuaucguugaucugcaCCGG-GCCGCCGUu- -3'
miRNA:   3'- cCCGC-CGGGCC---------------GGCCgCGGCGGCAuc -5'
26631 3' -68.1 NC_005808.1 + 31048 0.67 0.128875
Target:  5'- cGGGCcaacgugcgcgaaGGCCCgaacaucaggGGCCuGGUGCCGCUGc-- -3'
miRNA:   3'- -CCCG-------------CCGGG----------CCGG-CCGCGGCGGCauc -5'
26631 3' -68.1 NC_005808.1 + 31316 0.67 0.12921
Target:  5'- uGGUGGCCCGGCUGGaaucccagGUCGCgGc-- -3'
miRNA:   3'- cCCGCCGGGCCGGCCg-------CGGCGgCauc -5'
26631 3' -68.1 NC_005808.1 + 1031 0.67 0.132605
Target:  5'- uGGaaGGCCaCGGCCGGCggcagcauGUCGCCGc-- -3'
miRNA:   3'- -CCcgCCGG-GCCGGCCG--------CGGCGGCauc -5'
26631 3' -68.1 NC_005808.1 + 2504 0.67 0.132605
Target:  5'- -cGUGGCgCCgaucuucgaGGCCGGCcuGCUGCCGUAc -3'
miRNA:   3'- ccCGCCG-GG---------CCGGCCG--CGGCGGCAUc -5'
26631 3' -68.1 NC_005808.1 + 10549 0.67 0.136081
Target:  5'- --aCGGCCCguucgGGCCGGUGCUGCgCGa-- -3'
miRNA:   3'- cccGCCGGG-----CCGGCCGCGGCG-GCauc -5'
26631 3' -68.1 NC_005808.1 + 7636 0.67 0.136081
Target:  5'- gGGcGCGGCUCGacccacGCCGGCuCCuuGCCGUAc -3'
miRNA:   3'- -CC-CGCCGGGC------CGGCCGcGG--CGGCAUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.