Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26631 | 3' | -68.1 | NC_005808.1 | + | 752 | 0.99 | 0.000358 |
Target: 5'- uGGGC-GCCCGGCCGGCGCCGCCGUAGg -3' miRNA: 3'- -CCCGcCGGGCCGGCCGCGGCGGCAUC- -5' |
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26631 | 3' | -68.1 | NC_005808.1 | + | 688 | 0.8 | 0.013257 |
Target: 5'- cGGCGGCgCCGGCCGG-GCCGCCcaAGa -3' miRNA: 3'- cCCGCCG-GGCCGGCCgCGGCGGcaUC- -5' |
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26631 | 3' | -68.1 | NC_005808.1 | + | 27901 | 0.77 | 0.020059 |
Target: 5'- -aGCGGCgCGGCCGGCGCCaCCGcGGg -3' miRNA: 3'- ccCGCCGgGCCGGCCGCGGcGGCaUC- -5' |
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26631 | 3' | -68.1 | NC_005808.1 | + | 27839 | 0.75 | 0.031139 |
Target: 5'- cGGUGGCgCCGGCC-GCGCCGCUGc-- -3' miRNA: 3'- cCCGCCG-GGCCGGcCGCGGCGGCauc -5' |
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26631 | 3' | -68.1 | NC_005808.1 | + | 23814 | 0.74 | 0.042059 |
Target: 5'- cGGUGGCgCCGGCaUGGCGCUGCUGc-- -3' miRNA: 3'- cCCGCCG-GGCCG-GCCGCGGCGGCauc -5' |
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26631 | 3' | -68.1 | NC_005808.1 | + | 1037 | 0.73 | 0.043221 |
Target: 5'- aGGCGGCCaaguGGCUGcaaGCUGCCGUGGg -3' miRNA: 3'- cCCGCCGGg---CCGGCcg-CGGCGGCAUC- -5' |
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26631 | 3' | -68.1 | NC_005808.1 | + | 5636 | 0.72 | 0.050876 |
Target: 5'- uGGCGGCCaGcGuuGGCGCCGUCGa-- -3' miRNA: 3'- cCCGCCGGgC-CggCCGCGGCGGCauc -5' |
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26631 | 3' | -68.1 | NC_005808.1 | + | 27503 | 0.72 | 0.053709 |
Target: 5'- cGGCGGCCuCGGCCgccagcuucucGGCGCgGUCGg-- -3' miRNA: 3'- cCCGCCGG-GCCGG-----------CCGCGgCGGCauc -5' |
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26631 | 3' | -68.1 | NC_005808.1 | + | 37564 | 0.72 | 0.059843 |
Target: 5'- cGGcCGGCCCagcguccggugcGGCUGGCGCCGuuGa-- -3' miRNA: 3'- cCC-GCCGGG------------CCGGCCGCGGCggCauc -5' |
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26631 | 3' | -68.1 | NC_005808.1 | + | 24302 | 0.71 | 0.070332 |
Target: 5'- gGGGCGGUgaGGUCGGCGagcaGCCGcGGg -3' miRNA: 3'- -CCCGCCGggCCGGCCGCgg--CGGCaUC- -5' |
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26631 | 3' | -68.1 | NC_005808.1 | + | 18541 | 0.71 | 0.070332 |
Target: 5'- cGGUGGacgaaUCGGCCGaCGCCGCCGgcGc -3' miRNA: 3'- cCCGCCg----GGCCGGCcGCGGCGGCauC- -5' |
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26631 | 3' | -68.1 | NC_005808.1 | + | 40912 | 0.71 | 0.072244 |
Target: 5'- cGGGCGGUcauggCCGGCCuGCGCCuggcgcgucggGCCGa-- -3' miRNA: 3'- -CCCGCCG-----GGCCGGcCGCGG-----------CGGCauc -5' |
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26631 | 3' | -68.1 | NC_005808.1 | + | 7307 | 0.7 | 0.073612 |
Target: 5'- uGGGCGGCCgacaucgccgagggUGaGCgCGGCGCagaugcuGCCGUGGa -3' miRNA: 3'- -CCCGCCGG--------------GC-CG-GCCGCGg------CGGCAUC- -5' |
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26631 | 3' | -68.1 | NC_005808.1 | + | 4804 | 0.7 | 0.074206 |
Target: 5'- cGGCuGGCgcugcgggauugCUGGCCGGCgacagGUCGCCGUAGu -3' miRNA: 3'- cCCG-CCG------------GGCCGGCCG-----CGGCGGCAUC- -5' |
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26631 | 3' | -68.1 | NC_005808.1 | + | 32434 | 0.7 | 0.080404 |
Target: 5'- uGGGCGGCCgGGgccUCGGCGgCGaCCGcAGc -3' miRNA: 3'- -CCCGCCGGgCC---GGCCGCgGC-GGCaUC- -5' |
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26631 | 3' | -68.1 | NC_005808.1 | + | 41321 | 0.7 | 0.082577 |
Target: 5'- uGGGUcgcuGGCCgGGaauaCCGGCGCuCGCCGg-- -3' miRNA: 3'- -CCCG----CCGGgCC----GGCCGCG-GCGGCauc -5' |
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26631 | 3' | -68.1 | NC_005808.1 | + | 6467 | 0.7 | 0.084807 |
Target: 5'- uGGGCcgcgacuacaccGGgCCGGCCGGCcugcgccugauuGCCGaCGUGGg -3' miRNA: 3'- -CCCG------------CCgGGCCGGCCG------------CGGCgGCAUC- -5' |
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26631 | 3' | -68.1 | NC_005808.1 | + | 6389 | 0.69 | 0.089439 |
Target: 5'- aGGCGcaGgCCGGCCGGC-CCGgUGUAGu -3' miRNA: 3'- cCCGC--CgGGCCGGCCGcGGCgGCAUC- -5' |
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26631 | 3' | -68.1 | NC_005808.1 | + | 25879 | 0.69 | 0.092824 |
Target: 5'- cGGCGGCCCGGugcagaucaacgauaCCGagcGCGCCGCgCGc-- -3' miRNA: 3'- cCCGCCGGGCC---------------GGC---CGCGGCG-GCauc -5' |
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26631 | 3' | -68.1 | NC_005808.1 | + | 223 | 0.69 | 0.094062 |
Target: 5'- gGGGCGcauccGCCUGcggggaaGCCuGGCGCCacGCCGUAGc -3' miRNA: 3'- -CCCGC-----CGGGC-------CGG-CCGCGG--CGGCAUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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