miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26631 3' -68.1 NC_005808.1 + 752 0.99 0.000358
Target:  5'- uGGGC-GCCCGGCCGGCGCCGCCGUAGg -3'
miRNA:   3'- -CCCGcCGGGCCGGCCGCGGCGGCAUC- -5'
26631 3' -68.1 NC_005808.1 + 688 0.8 0.013257
Target:  5'- cGGCGGCgCCGGCCGG-GCCGCCcaAGa -3'
miRNA:   3'- cCCGCCG-GGCCGGCCgCGGCGGcaUC- -5'
26631 3' -68.1 NC_005808.1 + 27901 0.77 0.020059
Target:  5'- -aGCGGCgCGGCCGGCGCCaCCGcGGg -3'
miRNA:   3'- ccCGCCGgGCCGGCCGCGGcGGCaUC- -5'
26631 3' -68.1 NC_005808.1 + 27839 0.75 0.031139
Target:  5'- cGGUGGCgCCGGCC-GCGCCGCUGc-- -3'
miRNA:   3'- cCCGCCG-GGCCGGcCGCGGCGGCauc -5'
26631 3' -68.1 NC_005808.1 + 23814 0.74 0.042059
Target:  5'- cGGUGGCgCCGGCaUGGCGCUGCUGc-- -3'
miRNA:   3'- cCCGCCG-GGCCG-GCCGCGGCGGCauc -5'
26631 3' -68.1 NC_005808.1 + 1037 0.73 0.043221
Target:  5'- aGGCGGCCaaguGGCUGcaaGCUGCCGUGGg -3'
miRNA:   3'- cCCGCCGGg---CCGGCcg-CGGCGGCAUC- -5'
26631 3' -68.1 NC_005808.1 + 5636 0.72 0.050876
Target:  5'- uGGCGGCCaGcGuuGGCGCCGUCGa-- -3'
miRNA:   3'- cCCGCCGGgC-CggCCGCGGCGGCauc -5'
26631 3' -68.1 NC_005808.1 + 27503 0.72 0.053709
Target:  5'- cGGCGGCCuCGGCCgccagcuucucGGCGCgGUCGg-- -3'
miRNA:   3'- cCCGCCGG-GCCGG-----------CCGCGgCGGCauc -5'
26631 3' -68.1 NC_005808.1 + 37564 0.72 0.059843
Target:  5'- cGGcCGGCCCagcguccggugcGGCUGGCGCCGuuGa-- -3'
miRNA:   3'- cCC-GCCGGG------------CCGGCCGCGGCggCauc -5'
26631 3' -68.1 NC_005808.1 + 24302 0.71 0.070332
Target:  5'- gGGGCGGUgaGGUCGGCGagcaGCCGcGGg -3'
miRNA:   3'- -CCCGCCGggCCGGCCGCgg--CGGCaUC- -5'
26631 3' -68.1 NC_005808.1 + 18541 0.71 0.070332
Target:  5'- cGGUGGacgaaUCGGCCGaCGCCGCCGgcGc -3'
miRNA:   3'- cCCGCCg----GGCCGGCcGCGGCGGCauC- -5'
26631 3' -68.1 NC_005808.1 + 40912 0.71 0.072244
Target:  5'- cGGGCGGUcauggCCGGCCuGCGCCuggcgcgucggGCCGa-- -3'
miRNA:   3'- -CCCGCCG-----GGCCGGcCGCGG-----------CGGCauc -5'
26631 3' -68.1 NC_005808.1 + 7307 0.7 0.073612
Target:  5'- uGGGCGGCCgacaucgccgagggUGaGCgCGGCGCagaugcuGCCGUGGa -3'
miRNA:   3'- -CCCGCCGG--------------GC-CG-GCCGCGg------CGGCAUC- -5'
26631 3' -68.1 NC_005808.1 + 4804 0.7 0.074206
Target:  5'- cGGCuGGCgcugcgggauugCUGGCCGGCgacagGUCGCCGUAGu -3'
miRNA:   3'- cCCG-CCG------------GGCCGGCCG-----CGGCGGCAUC- -5'
26631 3' -68.1 NC_005808.1 + 32434 0.7 0.080404
Target:  5'- uGGGCGGCCgGGgccUCGGCGgCGaCCGcAGc -3'
miRNA:   3'- -CCCGCCGGgCC---GGCCGCgGC-GGCaUC- -5'
26631 3' -68.1 NC_005808.1 + 41321 0.7 0.082577
Target:  5'- uGGGUcgcuGGCCgGGaauaCCGGCGCuCGCCGg-- -3'
miRNA:   3'- -CCCG----CCGGgCC----GGCCGCG-GCGGCauc -5'
26631 3' -68.1 NC_005808.1 + 6467 0.7 0.084807
Target:  5'- uGGGCcgcgacuacaccGGgCCGGCCGGCcugcgccugauuGCCGaCGUGGg -3'
miRNA:   3'- -CCCG------------CCgGGCCGGCCG------------CGGCgGCAUC- -5'
26631 3' -68.1 NC_005808.1 + 6389 0.69 0.089439
Target:  5'- aGGCGcaGgCCGGCCGGC-CCGgUGUAGu -3'
miRNA:   3'- cCCGC--CgGGCCGGCCGcGGCgGCAUC- -5'
26631 3' -68.1 NC_005808.1 + 25879 0.69 0.092824
Target:  5'- cGGCGGCCCGGugcagaucaacgauaCCGagcGCGCCGCgCGc-- -3'
miRNA:   3'- cCCGCCGGGCC---------------GGC---CGCGGCG-GCauc -5'
26631 3' -68.1 NC_005808.1 + 223 0.69 0.094062
Target:  5'- gGGGCGcauccGCCUGcggggaaGCCuGGCGCCacGCCGUAGc -3'
miRNA:   3'- -CCCGC-----CGGGC-------CGG-CCGCGG--CGGCAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.