Results 1 - 20 of 69 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26631 | 3' | -68.1 | NC_005808.1 | + | 223 | 0.69 | 0.094062 |
Target: 5'- gGGGCGcauccGCCUGcggggaaGCCuGGCGCCacGCCGUAGc -3' miRNA: 3'- -CCCGC-----CGGGC-------CGG-CCGCGG--CGGCAUC- -5' |
|||||||
26631 | 3' | -68.1 | NC_005808.1 | + | 688 | 0.8 | 0.013257 |
Target: 5'- cGGCGGCgCCGGCCGG-GCCGCCcaAGa -3' miRNA: 3'- cCCGCCG-GGCCGGCCgCGGCGGcaUC- -5' |
|||||||
26631 | 3' | -68.1 | NC_005808.1 | + | 752 | 0.99 | 0.000358 |
Target: 5'- uGGGC-GCCCGGCCGGCGCCGCCGUAGg -3' miRNA: 3'- -CCCGcCGGGCCGGCCGCGGCGGCAUC- -5' |
|||||||
26631 | 3' | -68.1 | NC_005808.1 | + | 874 | 0.67 | 0.136081 |
Target: 5'- cGGCaagGGCUgGGCgCGGCGCguCGCCGg-- -3' miRNA: 3'- cCCG---CCGGgCCG-GCCGCG--GCGGCauc -5' |
|||||||
26631 | 3' | -68.1 | NC_005808.1 | + | 1031 | 0.67 | 0.132605 |
Target: 5'- uGGaaGGCCaCGGCCGGCggcagcauGUCGCCGc-- -3' miRNA: 3'- -CCcgCCGG-GCCGGCCG--------CGGCGGCauc -5' |
|||||||
26631 | 3' | -68.1 | NC_005808.1 | + | 1037 | 0.73 | 0.043221 |
Target: 5'- aGGCGGCCaaguGGCUGcaaGCUGCCGUGGg -3' miRNA: 3'- cCCGCCGGg---CCGGCcg-CGGCGGCAUC- -5' |
|||||||
26631 | 3' | -68.1 | NC_005808.1 | + | 1314 | 0.68 | 0.107613 |
Target: 5'- aGGGCgacGGCCaccaGGCCGacaaGCGCgaggaaGCCGUGGu -3' miRNA: 3'- -CCCG---CCGGg---CCGGC----CGCGg-----CGGCAUC- -5' |
|||||||
26631 | 3' | -68.1 | NC_005808.1 | + | 2204 | 0.66 | 0.16704 |
Target: 5'- cGGCGGCgCGGuugaCCGGCuGCUGCaCGa-- -3' miRNA: 3'- cCCGCCGgGCC----GGCCG-CGGCG-GCauc -5' |
|||||||
26631 | 3' | -68.1 | NC_005808.1 | + | 2504 | 0.67 | 0.132605 |
Target: 5'- -cGUGGCgCCgaucuucgaGGCCGGCcuGCUGCCGUAc -3' miRNA: 3'- ccCGCCG-GG---------CCGGCCG--CGGCGGCAUc -5' |
|||||||
26631 | 3' | -68.1 | NC_005808.1 | + | 3645 | 0.66 | 0.16285 |
Target: 5'- uGGCGGCCgCGGaUCGGUGUaCGCCc--- -3' miRNA: 3'- cCCGCCGG-GCC-GGCCGCG-GCGGcauc -5' |
|||||||
26631 | 3' | -68.1 | NC_005808.1 | + | 3746 | 0.66 | 0.154752 |
Target: 5'- uGGUGGgCaC-GUCGGUGCCGCCGcUGGa -3' miRNA: 3'- cCCGCCgG-GcCGGCCGCGGCGGC-AUC- -5' |
|||||||
26631 | 3' | -68.1 | NC_005808.1 | + | 4531 | 0.67 | 0.14702 |
Target: 5'- uGGCGuGCUgGGCgGucGUGCCGCCGcGGa -3' miRNA: 3'- cCCGC-CGGgCCGgC--CGCGGCGGCaUC- -5' |
|||||||
26631 | 3' | -68.1 | NC_005808.1 | + | 4804 | 0.7 | 0.074206 |
Target: 5'- cGGCuGGCgcugcgggauugCUGGCCGGCgacagGUCGCCGUAGu -3' miRNA: 3'- cCCG-CCG------------GGCCGGCCG-----CGGCGGCAUC- -5' |
|||||||
26631 | 3' | -68.1 | NC_005808.1 | + | 5583 | 0.66 | 0.161611 |
Target: 5'- uGGGCGG-CCGGCguguccuacgacuuUGGCaGCauCGCCGUAc -3' miRNA: 3'- -CCCGCCgGGCCG--------------GCCG-CG--GCGGCAUc -5' |
|||||||
26631 | 3' | -68.1 | NC_005808.1 | + | 5636 | 0.72 | 0.050876 |
Target: 5'- uGGCGGCCaGcGuuGGCGCCGUCGa-- -3' miRNA: 3'- cCCGCCGGgC-CggCCGCGGCGGCauc -5' |
|||||||
26631 | 3' | -68.1 | NC_005808.1 | + | 6389 | 0.69 | 0.089439 |
Target: 5'- aGGCGcaGgCCGGCCGGC-CCGgUGUAGu -3' miRNA: 3'- cCCGC--CgGGCCGGCCGcGGCgGCAUC- -5' |
|||||||
26631 | 3' | -68.1 | NC_005808.1 | + | 6467 | 0.7 | 0.084807 |
Target: 5'- uGGGCcgcgacuacaccGGgCCGGCCGGCcugcgccugauuGCCGaCGUGGg -3' miRNA: 3'- -CCCG------------CCgGGCCGGCCG------------CGGCgGCAUC- -5' |
|||||||
26631 | 3' | -68.1 | NC_005808.1 | + | 7307 | 0.7 | 0.073612 |
Target: 5'- uGGGCGGCCgacaucgccgagggUGaGCgCGGCGCagaugcuGCCGUGGa -3' miRNA: 3'- -CCCGCCGG--------------GC-CG-GCCGCGg------CGGCAUC- -5' |
|||||||
26631 | 3' | -68.1 | NC_005808.1 | + | 7636 | 0.67 | 0.136081 |
Target: 5'- gGGcGCGGCUCGacccacGCCGGCuCCuuGCCGUAc -3' miRNA: 3'- -CC-CGCCGGGC------CGGCCGcGG--CGGCAUc -5' |
|||||||
26631 | 3' | -68.1 | NC_005808.1 | + | 9210 | 0.66 | 0.175712 |
Target: 5'- cGGCGGCgCGGCgcacguucugCGGCGCgC-CCGgcGg -3' miRNA: 3'- cCCGCCGgGCCG----------GCCGCG-GcGGCauC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home