miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26631 3' -68.1 NC_005808.1 + 27441 0.67 0.139282
Target:  5'- cGGCGGCCgcaGGCCcuGGCGCugguaugccagcgCGCCGc-- -3'
miRNA:   3'- cCCGCCGGg--CCGG--CCGCG-------------GCGGCauc -5'
26631 3' -68.1 NC_005808.1 + 18465 0.68 0.119502
Target:  5'- -cGCGGCgCCGG-CGGCGUCgGCCGa-- -3'
miRNA:   3'- ccCGCCG-GGCCgGCCGCGG-CGGCauc -5'
26631 3' -68.1 NC_005808.1 + 40573 0.68 0.12266
Target:  5'- aGGCGGCCgGuauGCCGGUGCUGgUGgcGu -3'
miRNA:   3'- cCCGCCGGgC---CGGCCGCGGCgGCauC- -5'
26631 3' -68.1 NC_005808.1 + 19872 0.68 0.12266
Target:  5'- cGGGCGuGCCgaaGGCguCGcGCGCCuucuugGCCGUGGc -3'
miRNA:   3'- -CCCGC-CGGg--CCG--GC-CGCGG------CGGCAUC- -5'
26631 3' -68.1 NC_005808.1 + 25801 0.67 0.127212
Target:  5'- cGGCGcGCUCGGuaucguugaucugcaCCGG-GCCGCCGUu- -3'
miRNA:   3'- cCCGC-CGGGCC---------------GGCCgCGGCGGCAuc -5'
26631 3' -68.1 NC_005808.1 + 31048 0.67 0.128875
Target:  5'- cGGGCcaacgugcgcgaaGGCCCgaacaucaggGGCCuGGUGCCGCUGc-- -3'
miRNA:   3'- -CCCG-------------CCGGG----------CCGG-CCGCGGCGGCauc -5'
26631 3' -68.1 NC_005808.1 + 31316 0.67 0.12921
Target:  5'- uGGUGGCCCGGCUGGaaucccagGUCGCgGc-- -3'
miRNA:   3'- cCCGCCGGGCCGGCCg-------CGGCGgCauc -5'
26631 3' -68.1 NC_005808.1 + 1031 0.67 0.132605
Target:  5'- uGGaaGGCCaCGGCCGGCggcagcauGUCGCCGc-- -3'
miRNA:   3'- -CCcgCCGG-GCCGGCCG--------CGGCGGCauc -5'
26631 3' -68.1 NC_005808.1 + 7636 0.67 0.136081
Target:  5'- gGGcGCGGCUCGacccacGCCGGCuCCuuGCCGUAc -3'
miRNA:   3'- -CC-CGCCGGGC------CGGCCGcGG--CGGCAUc -5'
26631 3' -68.1 NC_005808.1 + 25507 0.68 0.116116
Target:  5'- aGGGUcaGGCCCgcgaugaGGUCGGUuuuGCCGCCGc-- -3'
miRNA:   3'- -CCCG--CCGGG-------CCGGCCG---CGGCGGCauc -5'
26631 3' -68.1 NC_005808.1 + 13187 0.68 0.110477
Target:  5'- uGGGC-GCCCuuGGCCGGCGUuguaCGCCu--- -3'
miRNA:   3'- -CCCGcCGGG--CCGGCCGCG----GCGGcauc -5'
26631 3' -68.1 NC_005808.1 + 1314 0.68 0.107613
Target:  5'- aGGGCgacGGCCaccaGGCCGacaaGCGCgaggaaGCCGUGGu -3'
miRNA:   3'- -CCCG---CCGGg---CCGGC----CGCGg-----CGGCAUC- -5'
26631 3' -68.1 NC_005808.1 + 27839 0.75 0.031139
Target:  5'- cGGUGGCgCCGGCC-GCGCCGCUGc-- -3'
miRNA:   3'- cCCGCCG-GGCCGGcCGCGGCGGCauc -5'
26631 3' -68.1 NC_005808.1 + 27503 0.72 0.053709
Target:  5'- cGGCGGCCuCGGCCgccagcuucucGGCGCgGUCGg-- -3'
miRNA:   3'- cCCGCCGG-GCCGG-----------CCGCGgCGGCauc -5'
26631 3' -68.1 NC_005808.1 + 24302 0.71 0.070332
Target:  5'- gGGGCGGUgaGGUCGGCGagcaGCCGcGGg -3'
miRNA:   3'- -CCCGCCGggCCGGCCGCgg--CGGCaUC- -5'
26631 3' -68.1 NC_005808.1 + 4804 0.7 0.074206
Target:  5'- cGGCuGGCgcugcgggauugCUGGCCGGCgacagGUCGCCGUAGu -3'
miRNA:   3'- cCCG-CCG------------GGCCGGCCG-----CGGCGGCAUC- -5'
26631 3' -68.1 NC_005808.1 + 41321 0.7 0.082577
Target:  5'- uGGGUcgcuGGCCgGGaauaCCGGCGCuCGCCGg-- -3'
miRNA:   3'- -CCCG----CCGGgCC----GGCCGCG-GCGGCauc -5'
26631 3' -68.1 NC_005808.1 + 6389 0.69 0.089439
Target:  5'- aGGCGcaGgCCGGCCGGC-CCGgUGUAGu -3'
miRNA:   3'- cCCGC--CgGGCCGGCCGcGGCgGCAUC- -5'
26631 3' -68.1 NC_005808.1 + 13324 0.69 0.094311
Target:  5'- aGGCGGCguaggcuuUCGGCaGGuCGCCGCCGa-- -3'
miRNA:   3'- cCCGCCG--------GGCCGgCC-GCGGCGGCauc -5'
26631 3' -68.1 NC_005808.1 + 24575 0.69 0.096841
Target:  5'- aGGcCGGCCaCGGUCGG-GCCGuCCGgcGu -3'
miRNA:   3'- cCC-GCCGG-GCCGGCCgCGGC-GGCauC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.