miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26631 3' -68.1 NC_005808.1 + 27406 0.69 0.102904
Target:  5'- aGGuCGGCCCGGCCuacguggaaagcaacGcGCGCCugugggcGUCGUGGg -3'
miRNA:   3'- cCC-GCCGGGCCGG---------------C-CGCGG-------CGGCAUC- -5'
26631 3' -68.1 NC_005808.1 + 25879 0.69 0.092824
Target:  5'- cGGCGGCCCGGugcagaucaacgauaCCGagcGCGCCGCgCGc-- -3'
miRNA:   3'- cCCGCCGGGCC---------------GGC---CGCGGCG-GCauc -5'
26631 3' -68.1 NC_005808.1 + 25801 0.67 0.127212
Target:  5'- cGGCGcGCUCGGuaucguugaucugcaCCGG-GCCGCCGUu- -3'
miRNA:   3'- cCCGC-CGGGCC---------------GGCCgCGGCGGCAuc -5'
26631 3' -68.1 NC_005808.1 + 25693 0.66 0.150841
Target:  5'- aGGUGGacgcgcugCUGGCgaccGCGCCGCCGUGGu -3'
miRNA:   3'- cCCGCCg-------GGCCGgc--CGCGGCGGCAUC- -5'
26631 3' -68.1 NC_005808.1 + 25507 0.68 0.116116
Target:  5'- aGGGUcaGGCCCgcgaugaGGUCGGUuuuGCCGCCGc-- -3'
miRNA:   3'- -CCCG--CCGGG-------CCGGCCG---CGGCGGCauc -5'
26631 3' -68.1 NC_005808.1 + 25308 0.66 0.158754
Target:  5'- cGGcCGGCCCuGCCaccGGCGCucguCGCCGg-- -3'
miRNA:   3'- cCC-GCCGGGcCGG---CCGCG----GCGGCauc -5'
26631 3' -68.1 NC_005808.1 + 24641 0.67 0.139642
Target:  5'- cGGaCGGCCCgaccguGGCCGGCcUCGCCa--- -3'
miRNA:   3'- cCC-GCCGGG------CCGGCCGcGGCGGcauc -5'
26631 3' -68.1 NC_005808.1 + 24575 0.69 0.096841
Target:  5'- aGGcCGGCCaCGGUCGG-GCCGuCCGgcGu -3'
miRNA:   3'- cCC-GCCGG-GCCGGCCgCGGC-GGCauC- -5'
26631 3' -68.1 NC_005808.1 + 24302 0.71 0.070332
Target:  5'- gGGGCGGUgaGGUCGGCGagcaGCCGcGGg -3'
miRNA:   3'- -CCCGCCGggCCGGCCGCgg--CGGCaUC- -5'
26631 3' -68.1 NC_005808.1 + 23814 0.74 0.042059
Target:  5'- cGGUGGCgCCGGCaUGGCGCUGCUGc-- -3'
miRNA:   3'- cCCGCCG-GGCCG-GCCGCGGCGGCauc -5'
26631 3' -68.1 NC_005808.1 + 23739 0.67 0.14702
Target:  5'- cGGUGGCgCGcagcagcgccauGCCGGCGCCaCCGg-- -3'
miRNA:   3'- cCCGCCGgGC------------CGGCCGCGGcGGCauc -5'
26631 3' -68.1 NC_005808.1 + 22490 0.66 0.16704
Target:  5'- gGGGCgGGCUgGGCUGGUcauGCCcGCCa--- -3'
miRNA:   3'- -CCCG-CCGGgCCGGCCG---CGG-CGGcauc -5'
26631 3' -68.1 NC_005808.1 + 21822 0.67 0.137495
Target:  5'- cGGGCGGCCuguccuauguggacgCGGCC-GCGCCcaaCgGUGGc -3'
miRNA:   3'- -CCCGCCGG---------------GCCGGcCGCGGc--GgCAUC- -5'
26631 3' -68.1 NC_005808.1 + 21772 0.67 0.14702
Target:  5'- aGGCcGCCCGGCaCGGUGCUGauGUc- -3'
miRNA:   3'- cCCGcCGGGCCG-GCCGCGGCggCAuc -5'
26631 3' -68.1 NC_005808.1 + 19872 0.68 0.12266
Target:  5'- cGGGCGuGCCgaaGGCguCGcGCGCCuucuugGCCGUGGc -3'
miRNA:   3'- -CCCGC-CGGg--CCG--GC-CGCGG------CGGCAUC- -5'
26631 3' -68.1 NC_005808.1 + 18541 0.71 0.070332
Target:  5'- cGGUGGacgaaUCGGCCGaCGCCGCCGgcGc -3'
miRNA:   3'- cCCGCCg----GGCCGGCcGCGGCGGCauC- -5'
26631 3' -68.1 NC_005808.1 + 18465 0.68 0.119502
Target:  5'- -cGCGGCgCCGG-CGGCGUCgGCCGa-- -3'
miRNA:   3'- ccCGCCG-GGCCgGCCGCGG-CGGCauc -5'
26631 3' -68.1 NC_005808.1 + 17009 0.66 0.16285
Target:  5'- cGGCGGCaCGcuGCUGGaCGgCGCCGUGc -3'
miRNA:   3'- cCCGCCGgGC--CGGCC-GCgGCGGCAUc -5'
26631 3' -68.1 NC_005808.1 + 16067 0.66 0.158754
Target:  5'- -cGUGGCC--GCCGcGCGCggCGCCGUAGa -3'
miRNA:   3'- ccCGCCGGgcCGGC-CGCG--GCGGCAUC- -5'
26631 3' -68.1 NC_005808.1 + 14396 0.66 0.175712
Target:  5'- -aGCaGGCCCGGCaguucagccaaGGCGCgCGCCa--- -3'
miRNA:   3'- ccCG-CCGGGCCGg----------CCGCG-GCGGcauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.