Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26631 | 5' | -56.6 | NC_005808.1 | + | 29114 | 0.67 | 0.481854 |
Target: 5'- uGGcCUACgAGCCgccggUGGGUAUCGACcuggcCGAa -3' miRNA: 3'- -CC-GAUG-UCGGa----ACCCGUGGCUGa----GCU- -5' |
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26631 | 5' | -56.6 | NC_005808.1 | + | 32173 | 0.66 | 0.533469 |
Target: 5'- cGGCaGCGGCCa-GGGCguugagcaacgcgGCCGugUUGGc -3' miRNA: 3'- -CCGaUGUCGGaaCCCG-------------UGGCugAGCU- -5' |
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26631 | 5' | -56.6 | NC_005808.1 | + | 32586 | 0.67 | 0.492201 |
Target: 5'- cGGCaucacCAGCCUgcacGGGCGCgGAguuCUCGGc -3' miRNA: 3'- -CCGau---GUCGGAa---CCCGUGgCU---GAGCU- -5' |
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26631 | 5' | -56.6 | NC_005808.1 | + | 32731 | 0.69 | 0.384932 |
Target: 5'- gGGCUucacgucggGCAGCUUcGcGGCGCCGAacUUCGAc -3' miRNA: 3'- -CCGA---------UGUCGGAaC-CCGUGGCU--GAGCU- -5' |
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26631 | 5' | -56.6 | NC_005808.1 | + | 35216 | 0.7 | 0.34155 |
Target: 5'- cGGCUuCGGCCUucgcgcgaaUGGccuuGCACCagGACUCGAc -3' miRNA: 3'- -CCGAuGUCGGA---------ACC----CGUGG--CUGAGCU- -5' |
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26631 | 5' | -56.6 | NC_005808.1 | + | 35516 | 0.75 | 0.157038 |
Target: 5'- cGGCUGCGGCCUggaugaccagggccGGGCGCUugucgGAUUCGGg -3' miRNA: 3'- -CCGAUGUCGGAa-------------CCCGUGG-----CUGAGCU- -5' |
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26631 | 5' | -56.6 | NC_005808.1 | + | 36066 | 0.66 | 0.574805 |
Target: 5'- gGGCUGCGGUCUUugucgaugaccagcGGGCGCgUGGCgcugCGc -3' miRNA: 3'- -CCGAUGUCGGAA--------------CCCGUG-GCUGa---GCu -5' |
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26631 | 5' | -56.6 | NC_005808.1 | + | 37075 | 0.66 | 0.564936 |
Target: 5'- aGCUGcCGGCCUggaacuaccaaGGCACCGAgUUGGc -3' miRNA: 3'- cCGAU-GUCGGAac---------CCGUGGCUgAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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