miRNA display CGI


Results 41 - 60 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26632 5' -58.2 NC_005808.1 + 19553 0.74 0.153159
Target:  5'- -cGCAgCGGCCUGCCCACC-GGCa-- -3'
miRNA:   3'- gaUGUgGUUGGACGGGUGGaCCGgcu -5'
26632 5' -58.2 NC_005808.1 + 19852 0.67 0.419345
Target:  5'- uCUACcggGCCGGCCUGgcaaucagugaagaCCGCCucgUGGCCGGc -3'
miRNA:   3'- -GAUG---UGGUUGGACg-------------GGUGG---ACCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 20044 0.69 0.327276
Target:  5'- uCUACGCggacaucggCGGCCUGCCCgaaaccuggguuGCCUcguccacGGCCGAc -3'
miRNA:   3'- -GAUGUG---------GUUGGACGGG------------UGGA-------CCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 20679 0.79 0.061536
Target:  5'- -gACACCGACCUGCgacgCCGCCUGG-CGAa -3'
miRNA:   3'- gaUGUGGUUGGACG----GGUGGACCgGCU- -5'
26632 5' -58.2 NC_005808.1 + 21127 0.71 0.235827
Target:  5'- --gUAUCGACgCUGCCCAgCUUGGCCGc -3'
miRNA:   3'- gauGUGGUUG-GACGGGU-GGACCGGCu -5'
26632 5' -58.2 NC_005808.1 + 21662 0.69 0.312302
Target:  5'- -gGCACCAAUCcGCagaugaccgCCACCgaagUGGCCGAg -3'
miRNA:   3'- gaUGUGGUUGGaCG---------GGUGG----ACCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 21757 0.67 0.425063
Target:  5'- -aACcUCGACCUGUCgCACCUucuGGCUGAc -3'
miRNA:   3'- gaUGuGGUUGGACGG-GUGGA---CCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 23254 0.7 0.281779
Target:  5'- -gAgGCCGACCUGCUgcugucgCACCagcagggGGCCGAa -3'
miRNA:   3'- gaUgUGGUUGGACGG-------GUGGa------CCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 23288 0.71 0.223146
Target:  5'- gUGCGCCAcgaauGCCUguuugcgGCCgGCaCUGGCCGGg -3'
miRNA:   3'- gAUGUGGU-----UGGA-------CGGgUG-GACCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 23326 0.69 0.311529
Target:  5'- -gACACCGACCUGaccaugcuguucCCCAgCgaggcgcggucggUGGCCGAg -3'
miRNA:   3'- gaUGUGGUUGGAC------------GGGUgG-------------ACCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 23753 0.76 0.094899
Target:  5'- -aGCGCCAuGCCgGCgCCACCgGGCCGAu -3'
miRNA:   3'- gaUGUGGU-UGGaCG-GGUGGaCCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 24072 0.66 0.454333
Target:  5'- aUugGCCGACgC-GCCCACCuucgccagucugUGcGCCGAa -3'
miRNA:   3'- gAugUGGUUG-GaCGGGUGG------------AC-CGGCU- -5'
26632 5' -58.2 NC_005808.1 + 24133 0.7 0.275404
Target:  5'- gUAguCCAGCCggcUGCgCGCCUGGCCc- -3'
miRNA:   3'- gAUguGGUUGG---ACGgGUGGACCGGcu -5'
26632 5' -58.2 NC_005808.1 + 24466 0.66 0.474442
Target:  5'- -gACGCCGacgACCUG-CUGCUUGGCCu- -3'
miRNA:   3'- gaUGUGGU---UGGACgGGUGGACCGGcu -5'
26632 5' -58.2 NC_005808.1 + 24646 0.69 0.312302
Target:  5'- -cACGCCGGacgGCCCgACCgUGGCCGGc -3'
miRNA:   3'- gaUGUGGUUggaCGGG-UGG-ACCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 24710 0.75 0.112568
Target:  5'- -aACACCAuCCUGCCCGCC-GGCaCGc -3'
miRNA:   3'- gaUGUGGUuGGACGGGUGGaCCG-GCu -5'
26632 5' -58.2 NC_005808.1 + 26257 0.69 0.289729
Target:  5'- -gGCACgGgcACCcGCCgGCCUGGUCGGc -3'
miRNA:   3'- gaUGUGgU--UGGaCGGgUGGACCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 27238 0.71 0.229714
Target:  5'- uUGCuguCCAGCCggcGCCCcaggcuCUUGGCCGAg -3'
miRNA:   3'- gAUGu--GGUUGGa--CGGGu-----GGACCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 27505 0.71 0.212176
Target:  5'- -aGCGCCAggGCCUGCggCCGCCgGGCgCGGu -3'
miRNA:   3'- gaUGUGGU--UGGACG--GGUGGaCCG-GCU- -5'
26632 5' -58.2 NC_005808.1 + 28141 0.67 0.412733
Target:  5'- -gACGCCGcggccACCUGCCCGCUguucgagcagaccgUcGCCGAc -3'
miRNA:   3'- gaUGUGGU-----UGGACGGGUGG--------------AcCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.