miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26632 5' -58.2 NC_005808.1 + 9962 0.68 0.370055
Target:  5'- gUGCAgcUCGACaucGCCacgCGCCUGGCCGAg -3'
miRNA:   3'- gAUGU--GGUUGga-CGG---GUGGACCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 10914 0.71 0.235827
Target:  5'- -aAUGgCGACCUGCCCGCCgguuugcagGGCCu- -3'
miRNA:   3'- gaUGUgGUUGGACGGGUGGa--------CCGGcu -5'
26632 5' -58.2 NC_005808.1 + 10975 0.68 0.344436
Target:  5'- aCUGgGCC-ACCUGUUCgGCCaGGCCGGa -3'
miRNA:   3'- -GAUgUGGuUGGACGGG-UGGaCCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 11058 0.7 0.268456
Target:  5'- aUACGCuCAugCaauCCgGCCUGGCCGAa -3'
miRNA:   3'- gAUGUG-GUugGac-GGgUGGACCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 11355 0.73 0.161841
Target:  5'- ---aACCGuuuuCC-GCCUACCUGGCCGAg -3'
miRNA:   3'- gaugUGGUu---GGaCGGGUGGACCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 11479 0.66 0.464331
Target:  5'- -cACGCCGGCucgccgCUGCUCAagacCCUGGCCc- -3'
miRNA:   3'- gaUGUGGUUG------GACGGGU----GGACCGGcu -5'
26632 5' -58.2 NC_005808.1 + 12083 0.71 0.212176
Target:  5'- cCU-CGCCGGCCacgGCCgcgCugCUGGCCGAc -3'
miRNA:   3'- -GAuGUGGUUGGa--CGG---GugGACCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 12180 0.68 0.352832
Target:  5'- -cGCGCCAACCUGCCgauugaaACCgUGcucaaccaGCCGAa -3'
miRNA:   3'- gaUGUGGUUGGACGGg------UGG-AC--------CGGCU- -5'
26632 5' -58.2 NC_005808.1 + 12206 0.66 0.454333
Target:  5'- -cGCGCU-GCCUGCC--CCUGGUCGGg -3'
miRNA:   3'- gaUGUGGuUGGACGGguGGACCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 12856 0.73 0.157446
Target:  5'- -cGCACCAGCCUGUCUGa--GGCCGAc -3'
miRNA:   3'- gaUGUGGUUGGACGGGUggaCCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 13249 0.7 0.254986
Target:  5'- -aACGCCGGCCaagggcGCCCAgCgcGGCCGAc -3'
miRNA:   3'- gaUGUGGUUGGa-----CGGGUgGa-CCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 13290 0.67 0.396946
Target:  5'- -aGCGCCGAUUgcaGCgCGCCggGGCCGGc -3'
miRNA:   3'- gaUGUGGUUGGa--CGgGUGGa-CCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 14810 0.66 0.484662
Target:  5'- cCUGCACCucggcGGCgCUGCCUucGCCcaGGUCGAu -3'
miRNA:   3'- -GAUGUGG-----UUG-GACGGG--UGGa-CCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 15107 0.68 0.336184
Target:  5'- -cGCGCCGuaauAgCUGCCUACCaGGcCCGAc -3'
miRNA:   3'- gaUGUGGU----UgGACGGGUGGaCC-GGCU- -5'
26632 5' -58.2 NC_005808.1 + 16887 0.68 0.361372
Target:  5'- aUGCGCCGcgugaaCUGCgCCGCCUGGgCGc -3'
miRNA:   3'- gAUGUGGUug----GACG-GGUGGACCgGCu -5'
26632 5' -58.2 NC_005808.1 + 17938 0.71 0.223736
Target:  5'- uCUGCAauCUGGCCcugGCCUACCUGGgCGAc -3'
miRNA:   3'- -GAUGU--GGUUGGa--CGGGUGGACCgGCU- -5'
26632 5' -58.2 NC_005808.1 + 18266 0.76 0.10636
Target:  5'- cCUGCGCCGagaACUUGCCgGCCgucagcgGGCCGGu -3'
miRNA:   3'- -GAUGUGGU---UGGACGGgUGGa------CCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 18357 0.74 0.133277
Target:  5'- uUACACCGucgccACCgGCCCGCUgacGGCCGGc -3'
miRNA:   3'- gAUGUGGU-----UGGaCGGGUGGa--CCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 18473 0.67 0.396947
Target:  5'- -aACGCCA-CCUucGCCgACgUGGCCGc -3'
miRNA:   3'- gaUGUGGUuGGA--CGGgUGgACCGGCu -5'
26632 5' -58.2 NC_005808.1 + 18759 0.67 0.415559
Target:  5'- gCUGCuGCUGACCgagGCCCGCgUgguguaacaGGCCGGg -3'
miRNA:   3'- -GAUG-UGGUUGGa--CGGGUGgA---------CCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.