miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26632 5' -58.2 NC_005808.1 + 536 0.68 0.344436
Target:  5'- -gGCAuCCGACCgcgacagcGCCCGCaagCUGGCCGc -3'
miRNA:   3'- gaUGU-GGUUGGa-------CGGGUG---GACCGGCu -5'
26632 5' -58.2 NC_005808.1 + 703 0.71 0.237688
Target:  5'- -gGCACCGACUcgacgccggacgccgUGUCCACggcgcugCUGGCCGAc -3'
miRNA:   3'- gaUGUGGUUGG---------------ACGGGUG-------GACCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 905 1.08 0.000406
Target:  5'- uCUACACCAACCUGCCCACCUGGCCGAc -3'
miRNA:   3'- -GAUGUGGUUGGACGGGUGGACCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 968 0.71 0.235827
Target:  5'- -cACGgCAGCUUGCagCCACUUGGCCGc -3'
miRNA:   3'- gaUGUgGUUGGACG--GGUGGACCGGCu -5'
26632 5' -58.2 NC_005808.1 + 2501 0.67 0.415559
Target:  5'- -gGCGCCGAUCUucgagGCCgGCCUGcuGCCGu -3'
miRNA:   3'- gaUGUGGUUGGA-----CGGgUGGAC--CGGCu -5'
26632 5' -58.2 NC_005808.1 + 2657 0.7 0.275404
Target:  5'- cCU-CGCCAACCUGCUgGCCUugcaaGCUGAa -3'
miRNA:   3'- -GAuGUGGUUGGACGGgUGGAc----CGGCU- -5'
26632 5' -58.2 NC_005808.1 + 3582 0.68 0.370055
Target:  5'- gUACACCGAUCcGCggCCGCCaguguUGGCCGu -3'
miRNA:   3'- gAUGUGGUUGGaCG--GGUGG-----ACCGGCu -5'
26632 5' -58.2 NC_005808.1 + 3805 0.75 0.115797
Target:  5'- -gGCACCGACgUGCCCACCaccGGCgUGAa -3'
miRNA:   3'- gaUGUGGUUGgACGGGUGGa--CCG-GCU- -5'
26632 5' -58.2 NC_005808.1 + 4690 0.66 0.464331
Target:  5'- cCUGCGgCAGCgCggGCCaacauugGCCUGGCUGAc -3'
miRNA:   3'- -GAUGUgGUUG-Ga-CGGg------UGGACCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 4889 0.66 0.444454
Target:  5'- aCUACGgCGACCUG-UCGCC-GGCCa- -3'
miRNA:   3'- -GAUGUgGUUGGACgGGUGGaCCGGcu -5'
26632 5' -58.2 NC_005808.1 + 4975 0.67 0.387844
Target:  5'- -cGCuGCCGACgUuUCCACCgUGGCCGAa -3'
miRNA:   3'- gaUG-UGGUUGgAcGGGUGG-ACCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 5575 0.66 0.484662
Target:  5'- -gGCGCCAACgCUGgCCGCCaccGuGUCGAu -3'
miRNA:   3'- gaUGUGGUUG-GACgGGUGGa--C-CGGCU- -5'
26632 5' -58.2 NC_005808.1 + 6302 0.68 0.352832
Target:  5'- --uUACCGGCgUGCaggcCCUGGCCGAa -3'
miRNA:   3'- gauGUGGUUGgACGggu-GGACCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 6458 0.74 0.148978
Target:  5'- aCUACACCgGGCCgGCCgGCCUGcGCCuGAu -3'
miRNA:   3'- -GAUGUGG-UUGGaCGGgUGGAC-CGG-CU- -5'
26632 5' -58.2 NC_005808.1 + 6630 0.73 0.180542
Target:  5'- --cCGCCAGCUUcGCgCGCUUGGCCGGa -3'
miRNA:   3'- gauGUGGUUGGA-CGgGUGGACCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 9183 0.69 0.312302
Target:  5'- -aACGCUAucuggcgauACCUGCCCACCggcaagaacGGCCu- -3'
miRNA:   3'- gaUGUGGU---------UGGACGGGUGGa--------CCGGcu -5'
26632 5' -58.2 NC_005808.1 + 9381 0.71 0.212176
Target:  5'- -cGCGCCGACgUGCgCCGCCaGGUCGc -3'
miRNA:   3'- gaUGUGGUUGgACG-GGUGGaCCGGCu -5'
26632 5' -58.2 NC_005808.1 + 9496 0.69 0.328078
Target:  5'- -cAUGCCAGCCUGuUCCGCCgUGG-CGAa -3'
miRNA:   3'- gaUGUGGUUGGAC-GGGUGG-ACCgGCU- -5'
26632 5' -58.2 NC_005808.1 + 9617 0.68 0.378879
Target:  5'- --cCACCGGCgaGCagauCGCaCUGGCCGAa -3'
miRNA:   3'- gauGUGGUUGgaCGg---GUG-GACCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 9859 0.67 0.406186
Target:  5'- aCUGguUCGGCgUGCgCgACCUGGCCGc -3'
miRNA:   3'- -GAUguGGUUGgACG-GgUGGACCGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.