miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26632 5' -58.2 NC_005808.1 + 29263 0.67 0.415559
Target:  5'- -cGCGuCCGACCUGCCggucauCACCgaGGCCc- -3'
miRNA:   3'- gaUGU-GGUUGGACGG------GUGGa-CCGGcu -5'
26632 5' -58.2 NC_005808.1 + 18759 0.67 0.415559
Target:  5'- gCUGCuGCUGACCgagGCCCGCgUgguguaacaGGCCGGg -3'
miRNA:   3'- -GAUG-UGGUUGGa--CGGGUGgA---------CCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 2501 0.67 0.415559
Target:  5'- -gGCGCCGAUCUucgagGCCgGCCUGcuGCCGu -3'
miRNA:   3'- gaUGUGGUUGGA-----CGGgUGGAC--CGGCu -5'
26632 5' -58.2 NC_005808.1 + 34037 0.67 0.415558
Target:  5'- -cGCGCCuguCgCUGCCCGCCaucGGCgCGGc -3'
miRNA:   3'- gaUGUGGuu-G-GACGGGUGGa--CCG-GCU- -5'
26632 5' -58.2 NC_005808.1 + 28141 0.67 0.412733
Target:  5'- -gACGCCGcggccACCUGCCCGCUguucgagcagaccgUcGCCGAc -3'
miRNA:   3'- gaUGUGGU-----UGGACGGGUGG--------------AcCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 9859 0.67 0.406186
Target:  5'- aCUGguUCGGCgUGCgCgACCUGGCCGc -3'
miRNA:   3'- -GAUguGGUUGgACG-GgUGGACCGGCu -5'
26632 5' -58.2 NC_005808.1 + 18473 0.67 0.396947
Target:  5'- -aACGCCA-CCUucGCCgACgUGGCCGc -3'
miRNA:   3'- gaUGUGGUuGGA--CGGgUGgACCGGCu -5'
26632 5' -58.2 NC_005808.1 + 13290 0.67 0.396946
Target:  5'- -aGCGCCGAUUgcaGCgCGCCggGGCCGGc -3'
miRNA:   3'- gaUGUGGUUGGa--CGgGUGGa-CCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 4975 0.67 0.387844
Target:  5'- -cGCuGCCGACgUuUCCACCgUGGCCGAa -3'
miRNA:   3'- gaUG-UGGUUGgAcGGGUGG-ACCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 9617 0.68 0.378879
Target:  5'- --cCACCGGCgaGCagauCGCaCUGGCCGAa -3'
miRNA:   3'- gauGUGGUUGgaCGg---GUG-GACCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 37603 0.68 0.377991
Target:  5'- aCUGCGCCGACCUGCUguuCGCCaacgucaUGGaaCUGAc -3'
miRNA:   3'- -GAUGUGGUUGGACGG---GUGG-------ACC--GGCU- -5'
26632 5' -58.2 NC_005808.1 + 3582 0.68 0.370055
Target:  5'- gUACACCGAUCcGCggCCGCCaguguUGGCCGu -3'
miRNA:   3'- gAUGUGGUUGGaCG--GGUGG-----ACCGGCu -5'
26632 5' -58.2 NC_005808.1 + 9962 0.68 0.370055
Target:  5'- gUGCAgcUCGACaucGCCacgCGCCUGGCCGAg -3'
miRNA:   3'- gAUGU--GGUUGga-CGG---GUGGACCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 16887 0.68 0.361372
Target:  5'- aUGCGCCGcgugaaCUGCgCCGCCUGGgCGc -3'
miRNA:   3'- gAUGUGGUug----GACG-GGUGGACCgGCu -5'
26632 5' -58.2 NC_005808.1 + 39914 0.68 0.360512
Target:  5'- aCUACGa-AACCUGCCguggcugaucgaaCACCUGGgCGAc -3'
miRNA:   3'- -GAUGUggUUGGACGG-------------GUGGACCgGCU- -5'
26632 5' -58.2 NC_005808.1 + 6302 0.68 0.352832
Target:  5'- --uUACCGGCgUGCaggcCCUGGCCGAa -3'
miRNA:   3'- gauGUGGUUGgACGggu-GGACCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 12180 0.68 0.352832
Target:  5'- -cGCGCCAACCUGCCgauugaaACCgUGcucaaccaGCCGAa -3'
miRNA:   3'- gaUGUGGUUGGACGGg------UGG-AC--------CGGCU- -5'
26632 5' -58.2 NC_005808.1 + 536 0.68 0.344436
Target:  5'- -gGCAuCCGACCgcgacagcGCCCGCaagCUGGCCGc -3'
miRNA:   3'- gaUGU-GGUUGGa-------CGGGUG---GACCGGCu -5'
26632 5' -58.2 NC_005808.1 + 10975 0.68 0.344436
Target:  5'- aCUGgGCC-ACCUGUUCgGCCaGGCCGGa -3'
miRNA:   3'- -GAUgUGGuUGGACGGG-UGGaCCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 15107 0.68 0.336184
Target:  5'- -cGCGCCGuaauAgCUGCCUACCaGGcCCGAc -3'
miRNA:   3'- gaUGUGGU----UgGACGGGUGGaCC-GGCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.