miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26633 3' -54 NC_005808.1 + 38273 0.66 0.750121
Target:  5'- --aGGCGccGUcGCGCCGGGCCuugagcGUGCGg -3'
miRNA:   3'- cgaUUGC--CAaUGUGGCCCGGc-----UACGC- -5'
26633 3' -54 NC_005808.1 + 10552 0.66 0.750121
Target:  5'- aGC--ACGGcccguUCGGGCCGGUGCu -3'
miRNA:   3'- -CGauUGCCaauguGGCCCGGCUACGc -5'
26633 3' -54 NC_005808.1 + 26524 0.66 0.739485
Target:  5'- aCUGACGG--AUGCCGaGGUCGA-GCGc -3'
miRNA:   3'- cGAUUGCCaaUGUGGC-CCGGCUaCGC- -5'
26633 3' -54 NC_005808.1 + 41888 0.66 0.728736
Target:  5'- cUUGcCGGUcAgAUCGGGCCGcUGCGc -3'
miRNA:   3'- cGAUuGCCAaUgUGGCCCGGCuACGC- -5'
26633 3' -54 NC_005808.1 + 3240 0.66 0.728736
Target:  5'- cGC-AGCGG--ACGCCGGGCUugccAUGCu -3'
miRNA:   3'- -CGaUUGCCaaUGUGGCCCGGc---UACGc -5'
26633 3' -54 NC_005808.1 + 36732 0.66 0.717886
Target:  5'- cGCUGGCGGcaucccagacgUACACgGGGCCauUGUc -3'
miRNA:   3'- -CGAUUGCCa----------AUGUGgCCCGGcuACGc -5'
26633 3' -54 NC_005808.1 + 30042 0.66 0.706948
Target:  5'- --cGACGGcUGCAuCCaGGCCGucGUGCGc -3'
miRNA:   3'- cgaUUGCCaAUGU-GGcCCGGC--UACGC- -5'
26633 3' -54 NC_005808.1 + 25147 0.67 0.695934
Target:  5'- cGCcgGGCGcGcUGCGCUGGGUggCGAUGCu -3'
miRNA:   3'- -CGa-UUGC-CaAUGUGGCCCG--GCUACGc -5'
26633 3' -54 NC_005808.1 + 29598 0.67 0.694829
Target:  5'- gGCgcGCGGUUugccaguuguccaGCGCCGGGCgcuUGUGg -3'
miRNA:   3'- -CGauUGCCAA-------------UGUGGCCCGgcuACGC- -5'
26633 3' -54 NC_005808.1 + 6663 0.67 0.684856
Target:  5'- cGCUcAUGGUcUGCGCCacGCCGAUGUu -3'
miRNA:   3'- -CGAuUGCCA-AUGUGGccCGGCUACGc -5'
26633 3' -54 NC_005808.1 + 15142 0.67 0.684856
Target:  5'- uGCUGGCGGcggaUGCGCCcagggcgacGGCUGAUGUu -3'
miRNA:   3'- -CGAUUGCCa---AUGUGGc--------CCGGCUACGc -5'
26633 3' -54 NC_005808.1 + 37210 0.67 0.681522
Target:  5'- uGCUcGCGGcgcGCACCagugacauaacccuGGGCgCGGUGCa -3'
miRNA:   3'- -CGAuUGCCaa-UGUGG--------------CCCG-GCUACGc -5'
26633 3' -54 NC_005808.1 + 19204 0.67 0.673725
Target:  5'- gGCUGACGGUgugg--GGGCCGAacacccUGCa -3'
miRNA:   3'- -CGAUUGCCAauguggCCCGGCU------ACGc -5'
26633 3' -54 NC_005808.1 + 38036 0.67 0.673725
Target:  5'- --cGGCGGggAUGCUGGGCCacgcUGCGu -3'
miRNA:   3'- cgaUUGCCaaUGUGGCCCGGcu--ACGC- -5'
26633 3' -54 NC_005808.1 + 40508 0.67 0.662553
Target:  5'- ---cACGGcgAcCACCuGGGCCGAUGUc -3'
miRNA:   3'- cgauUGCCaaU-GUGG-CCCGGCUACGc -5'
26633 3' -54 NC_005808.1 + 15590 0.67 0.63901
Target:  5'- cGCU-GCGGaUGCACCGcgccaucGGCCagGAUGCu -3'
miRNA:   3'- -CGAuUGCCaAUGUGGC-------CCGG--CUACGc -5'
26633 3' -54 NC_005808.1 + 5388 0.68 0.628906
Target:  5'- uGCUGACGGUgcuCACgucGCCGAUGUu -3'
miRNA:   3'- -CGAUUGCCAau-GUGgccCGGCUACGc -5'
26633 3' -54 NC_005808.1 + 24493 0.68 0.60647
Target:  5'- cGCgcGCGGcaccgACAaaUCGGGCCGGcUGCGc -3'
miRNA:   3'- -CGauUGCCaa---UGU--GGCCCGGCU-ACGC- -5'
26633 3' -54 NC_005808.1 + 41326 0.68 0.60647
Target:  5'- cGCUGGcCGGgaAUACCGGcgcucGCCGGacgGCGg -3'
miRNA:   3'- -CGAUU-GCCaaUGUGGCC-----CGGCUa--CGC- -5'
26633 3' -54 NC_005808.1 + 33859 0.68 0.60647
Target:  5'- uGUUGACGGUaGCGCCGcgcccGCCGG-GCa -3'
miRNA:   3'- -CGAUUGCCAaUGUGGCc----CGGCUaCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.