Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26634 | 3' | -57.8 | NC_005808.1 | + | 35539 | 0.66 | 0.478154 |
Target: 5'- cCCGCUcaCGuCCGCgaagUCGUCGGCUg -3' miRNA: 3'- uGGCGAaaGCuGGCGg---AGUAGCCGGu -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 11151 | 0.66 | 0.472058 |
Target: 5'- uGCUGCUg--GGCCGCCUgcgCAcguugcgugcgcuggUCGGCCGu -3' miRNA: 3'- -UGGCGAaagCUGGCGGA---GU---------------AGCCGGU- -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 29559 | 0.66 | 0.468017 |
Target: 5'- cGCCGUgcUCGGgguaUCGCgUCAggUCGGCCGc -3' miRNA: 3'- -UGGCGaaAGCU----GGCGgAGU--AGCCGGU- -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 16326 | 0.66 | 0.51972 |
Target: 5'- gGCCGCgcgCGAggccaacgccauCCGCCaUAUCGuGCCGc -3' miRNA: 3'- -UGGCGaaaGCU------------GGCGGaGUAGC-CGGU- -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 5714 | 0.66 | 0.51972 |
Target: 5'- uACCGCUgguuuCCGCCgugUA-CGGCCAc -3' miRNA: 3'- -UGGCGAaagcuGGCGGa--GUaGCCGGU- -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 19829 | 0.66 | 0.51972 |
Target: 5'- --aGUgaa-GACCGCCUCGU-GGCCGg -3' miRNA: 3'- uggCGaaagCUGGCGGAGUAgCCGGU- -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 23174 | 0.66 | 0.509187 |
Target: 5'- uACCGCUgUCGccgugggcGCCGCCguuggCGUCGGg-- -3' miRNA: 3'- -UGGCGAaAGC--------UGGCGGa----GUAGCCggu -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 32439 | 0.66 | 0.498744 |
Target: 5'- cCUGCUgggCGGCCgggGCCUCggCGGCg- -3' miRNA: 3'- uGGCGAaa-GCUGG---CGGAGuaGCCGgu -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 1348 | 0.66 | 0.478154 |
Target: 5'- aGCCGUggUCGGCgGCCUugcgCAUcCGGCg- -3' miRNA: 3'- -UGGCGaaAGCUGgCGGA----GUA-GCCGgu -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 16721 | 0.66 | 0.468017 |
Target: 5'- aACCGa--UCcGCUcCCUCGUCGGCCGg -3' miRNA: 3'- -UGGCgaaAGcUGGcGGAGUAGCCGGU- -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 23541 | 0.66 | 0.51972 |
Target: 5'- cGCaCGCggUCGAUgGCC---UCGGCCGa -3' miRNA: 3'- -UG-GCGaaAGCUGgCGGaguAGCCGGU- -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 34062 | 0.66 | 0.51972 |
Target: 5'- cGCgGCUgUCGAgCGUUUCAUCGccuacGCCAc -3' miRNA: 3'- -UGgCGAaAGCUgGCGGAGUAGC-----CGGU- -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 33590 | 0.66 | 0.516551 |
Target: 5'- cACCGCUggCGAauccggcacggccaCCGCUggcggCA-CGGCCAc -3' miRNA: 3'- -UGGCGAaaGCU--------------GGCGGa----GUaGCCGGU- -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 813 | 0.66 | 0.488398 |
Target: 5'- cGCCGCgccCaGCCcuuGCCgaaCGUCGGCCAg -3' miRNA: 3'- -UGGCGaaaGcUGG---CGGa--GUAGCCGGU- -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 5272 | 0.66 | 0.478154 |
Target: 5'- cACCGUguugaugUUCG-CgGCgUUGUCGGCCAc -3' miRNA: 3'- -UGGCGa------AAGCuGgCGgAGUAGCCGGU- -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 21577 | 0.66 | 0.498744 |
Target: 5'- uGCCGC--UCGGCCaCUUCGguggCGGUCAu -3' miRNA: 3'- -UGGCGaaAGCUGGcGGAGUa---GCCGGU- -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 8621 | 0.66 | 0.478154 |
Target: 5'- -gCGCUUcUCGGCCGCUgcgguggcgaggUCGcCGGCCu -3' miRNA: 3'- ugGCGAA-AGCUGGCGG------------AGUaGCCGGu -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 15590 | 0.67 | 0.409678 |
Target: 5'- cGCUGCggaUGcACCGCgC-CAUCGGCCAg -3' miRNA: 3'- -UGGCGaaaGC-UGGCG-GaGUAGCCGGU- -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 8554 | 0.67 | 0.409678 |
Target: 5'- gGCCGCgcUCGACCucauccuggGCgUCGUaGGCCGc -3' miRNA: 3'- -UGGCGaaAGCUGG---------CGgAGUAgCCGGU- -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 36217 | 0.67 | 0.41625 |
Target: 5'- cGCCGCgg-CGGCCGaCCUgGUguaacccagcgcccCGGCCu -3' miRNA: 3'- -UGGCGaaaGCUGGC-GGAgUA--------------GCCGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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