Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26634 | 3' | -57.8 | NC_005808.1 | + | 813 | 0.66 | 0.488398 |
Target: 5'- cGCCGCgccCaGCCcuuGCCgaaCGUCGGCCAg -3' miRNA: 3'- -UGGCGaaaGcUGG---CGGa--GUAGCCGGU- -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 1294 | 1.08 | 0.000497 |
Target: 5'- cACCGCUUUCGACCGCCUCAUCGGCCAu -3' miRNA: 3'- -UGGCGAAAGCUGGCGGAGUAGCCGGU- -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 1348 | 0.66 | 0.478154 |
Target: 5'- aGCCGUggUCGGCgGCCUugcgCAUcCGGCg- -3' miRNA: 3'- -UGGCGaaAGCUGgCGGA----GUA-GCCGgu -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 1464 | 0.67 | 0.438292 |
Target: 5'- -gCGCggUCGGCgGCCUCcuggcaGGCCGg -3' miRNA: 3'- ugGCGaaAGCUGgCGGAGuag---CCGGU- -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 3585 | 0.7 | 0.307615 |
Target: 5'- cACCGauccgCGGCCGCCagUGUUGGCCGu -3' miRNA: 3'- -UGGCgaaa-GCUGGCGGa-GUAGCCGGU- -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 3764 | 0.67 | 0.448082 |
Target: 5'- cGCCGCUg--GACguaGCCUCGgUCGuGCCGa -3' miRNA: 3'- -UGGCGAaagCUGg--CGGAGU-AGC-CGGU- -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 4886 | 0.72 | 0.220267 |
Target: 5'- cGCgGCga-CGGCgGCCUCGuuuUCGGCCAc -3' miRNA: 3'- -UGgCGaaaGCUGgCGGAGU---AGCCGGU- -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 5272 | 0.66 | 0.478154 |
Target: 5'- cACCGUguugaugUUCG-CgGCgUUGUCGGCCAc -3' miRNA: 3'- -UGGCGa------AAGCuGgCGgAGUAGCCGGU- -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 5587 | 0.72 | 0.220267 |
Target: 5'- gGCCGCcaccgugUCGAuguCCGCCUCGUUGGUa- -3' miRNA: 3'- -UGGCGaa-----AGCU---GGCGGAGUAGCCGgu -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 5714 | 0.66 | 0.51972 |
Target: 5'- uACCGCUgguuuCCGCCgugUA-CGGCCAc -3' miRNA: 3'- -UGGCGAaagcuGGCGGa--GUaGCCGGU- -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 8554 | 0.67 | 0.409678 |
Target: 5'- gGCCGCgcUCGACCucauccuggGCgUCGUaGGCCGc -3' miRNA: 3'- -UGGCGaaAGCUGG---------CGgAGUAgCCGGU- -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 8621 | 0.66 | 0.478154 |
Target: 5'- -gCGCUUcUCGGCCGCUgcgguggcgaggUCGcCGGCCu -3' miRNA: 3'- ugGCGAA-AGCUGGCGG------------AGUaGCCGGu -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 11151 | 0.66 | 0.472058 |
Target: 5'- uGCUGCUg--GGCCGCCUgcgCAcguugcgugcgcuggUCGGCCGu -3' miRNA: 3'- -UGGCGAaagCUGGCGGA---GU---------------AGCCGGU- -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 13537 | 0.68 | 0.364666 |
Target: 5'- cGCCGaacugUCGGCCGCCUgAcUCGGUg- -3' miRNA: 3'- -UGGCgaa--AGCUGGCGGAgU-AGCCGgu -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 14105 | 0.69 | 0.331197 |
Target: 5'- aGuuGCUUcuugagguuaUCG-CCGUaCUCGUCGGCCAg -3' miRNA: 3'- -UggCGAA----------AGCuGGCG-GAGUAGCCGGU- -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 14659 | 0.69 | 0.331197 |
Target: 5'- cACUGCUgaaaagcggaUCGGCCGCCggCAUCaGCCc -3' miRNA: 3'- -UGGCGAa---------AGCUGGCGGa-GUAGcCGGu -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 15590 | 0.67 | 0.409678 |
Target: 5'- cGCUGCggaUGcACCGCgC-CAUCGGCCAg -3' miRNA: 3'- -UGGCGaaaGC-UGGCG-GaGUAGCCGGU- -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 15690 | 0.67 | 0.438292 |
Target: 5'- gGCCGCUaUCGAcgaagaaggcguCCGCCUgggCAUCgaacuggcgcgaGGCCAu -3' miRNA: 3'- -UGGCGAaAGCU------------GGCGGA---GUAG------------CCGGU- -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 16326 | 0.66 | 0.51972 |
Target: 5'- gGCCGCgcgCGAggccaacgccauCCGCCaUAUCGuGCCGc -3' miRNA: 3'- -UGGCGaaaGCU------------GGCGGaGUAGC-CGGU- -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 16721 | 0.66 | 0.468017 |
Target: 5'- aACCGa--UCcGCUcCCUCGUCGGCCGg -3' miRNA: 3'- -UGGCgaaAGcUGGcGGAGUAGCCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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