miRNA display CGI


Results 21 - 40 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26634 3' -57.8 NC_005808.1 + 19616 0.69 0.331197
Target:  5'- uGCCGUccggggUCaugcgGGCCGCgaCAUCGGCCAg -3'
miRNA:   3'- -UGGCGaa----AG-----CUGGCGgaGUAGCCGGU- -5'
26634 3' -57.8 NC_005808.1 + 19829 0.66 0.51972
Target:  5'- --aGUgaa-GACCGCCUCGU-GGCCGg -3'
miRNA:   3'- uggCGaaagCUGGCGGAGUAgCCGGU- -5'
26634 3' -57.8 NC_005808.1 + 21577 0.66 0.498744
Target:  5'- uGCCGC--UCGGCCaCUUCGguggCGGUCAu -3'
miRNA:   3'- -UGGCGaaAGCUGGcGGAGUa---GCCGGU- -5'
26634 3' -57.8 NC_005808.1 + 22983 0.71 0.244637
Target:  5'- aGCCGgUcggaUUCGGCuuuCGCCUgGUCGGCCu -3'
miRNA:   3'- -UGGCgA----AAGCUG---GCGGAgUAGCCGGu -5'
26634 3' -57.8 NC_005808.1 + 23174 0.66 0.509187
Target:  5'- uACCGCUgUCGccgugggcGCCGCCguuggCGUCGGg-- -3'
miRNA:   3'- -UGGCGAaAGC--------UGGCGGa----GUAGCCggu -5'
26634 3' -57.8 NC_005808.1 + 23338 0.71 0.25107
Target:  5'- aGCCGCgcaaUUCGACgGCCUCG-CcGCCGa -3'
miRNA:   3'- -UGGCGa---AAGCUGgCGGAGUaGcCGGU- -5'
26634 3' -57.8 NC_005808.1 + 23541 0.66 0.51972
Target:  5'- cGCaCGCggUCGAUgGCC---UCGGCCGa -3'
miRNA:   3'- -UG-GCGaaAGCUGgCGGaguAGCCGGU- -5'
26634 3' -57.8 NC_005808.1 + 28082 0.71 0.238342
Target:  5'- cGCCGacaugaUCGGCuucuuccagCGCCUCAUCGGCUAc -3'
miRNA:   3'- -UGGCgaa---AGCUG---------GCGGAGUAGCCGGU- -5'
26634 3' -57.8 NC_005808.1 + 28558 0.68 0.39126
Target:  5'- gGCCGCcggccaucgCGGCgCGCa-CGUCGGCCAc -3'
miRNA:   3'- -UGGCGaaa------GCUG-GCGgaGUAGCCGGU- -5'
26634 3' -57.8 NC_005808.1 + 29559 0.66 0.468017
Target:  5'- cGCCGUgcUCGGgguaUCGCgUCAggUCGGCCGc -3'
miRNA:   3'- -UGGCGaaAGCU----GGCGgAGU--AGCCGGU- -5'
26634 3' -57.8 NC_005808.1 + 31093 0.67 0.438292
Target:  5'- cCCGCg--CGAUUGCCUCGgcCGGCa- -3'
miRNA:   3'- uGGCGaaaGCUGGCGGAGUa-GCCGgu -5'
26634 3' -57.8 NC_005808.1 + 32360 0.67 0.428626
Target:  5'- cGCUGCggUCG-CCGCCgaggCccCGGCCGc -3'
miRNA:   3'- -UGGCGaaAGCuGGCGGa---GuaGCCGGU- -5'
26634 3' -57.8 NC_005808.1 + 32439 0.66 0.498744
Target:  5'- cCUGCUgggCGGCCgggGCCUCggCGGCg- -3'
miRNA:   3'- uGGCGAaa-GCUGG---CGGAGuaGCCGgu -5'
26634 3' -57.8 NC_005808.1 + 33053 0.71 0.238342
Target:  5'- cCCGCgugcugUCGugCGCUUCAUCGGgUCGc -3'
miRNA:   3'- uGGCGaa----AGCugGCGGAGUAGCC-GGU- -5'
26634 3' -57.8 NC_005808.1 + 33590 0.66 0.516551
Target:  5'- cACCGCUggCGAauccggcacggccaCCGCUggcggCA-CGGCCAc -3'
miRNA:   3'- -UGGCGAaaGCU--------------GGCGGa----GUaGCCGGU- -5'
26634 3' -57.8 NC_005808.1 + 34062 0.66 0.51972
Target:  5'- cGCgGCUgUCGAgCGUUUCAUCGccuacGCCAc -3'
miRNA:   3'- -UGgCGAaAGCUgGCGGAGUAGC-----CGGU- -5'
26634 3' -57.8 NC_005808.1 + 34439 0.68 0.39126
Target:  5'- uUCGUgcgCGGCCGugcCCUCGUCGGCgAa -3'
miRNA:   3'- uGGCGaaaGCUGGC---GGAGUAGCCGgU- -5'
26634 3' -57.8 NC_005808.1 + 34877 0.69 0.339348
Target:  5'- gGCCGCcgagCGugCGCUgcaguUCAUCGGCa- -3'
miRNA:   3'- -UGGCGaaa-GCugGCGG-----AGUAGCCGgu -5'
26634 3' -57.8 NC_005808.1 + 35539 0.66 0.478154
Target:  5'- cCCGCUcaCGuCCGCgaagUCGUCGGCUg -3'
miRNA:   3'- uGGCGAaaGCuGGCGg---AGUAGCCGGu -5'
26634 3' -57.8 NC_005808.1 + 36217 0.67 0.41625
Target:  5'- cGCCGCgg-CGGCCGaCCUgGUguaacccagcgcccCGGCCu -3'
miRNA:   3'- -UGGCGaaaGCUGGC-GGAgUA--------------GCCGGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.