Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26634 | 3' | -57.8 | NC_005808.1 | + | 31093 | 0.67 | 0.438292 |
Target: 5'- cCCGCg--CGAUUGCCUCGgcCGGCa- -3' miRNA: 3'- uGGCGaaaGCUGGCGGAGUa-GCCGgu -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 32360 | 0.67 | 0.428626 |
Target: 5'- cGCUGCggUCG-CCGCCgaggCccCGGCCGc -3' miRNA: 3'- -UGGCGaaAGCuGGCGGa---GuaGCCGGU- -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 36217 | 0.67 | 0.41625 |
Target: 5'- cGCCGCgg-CGGCCGaCCUgGUguaacccagcgcccCGGCCu -3' miRNA: 3'- -UGGCGaaaGCUGGC-GGAgUA--------------GCCGGu -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 15590 | 0.67 | 0.409678 |
Target: 5'- cGCUGCggaUGcACCGCgC-CAUCGGCCAg -3' miRNA: 3'- -UGGCGaaaGC-UGGCG-GaGUAGCCGGU- -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 8554 | 0.67 | 0.409678 |
Target: 5'- gGCCGCgcUCGACCucauccuggGCgUCGUaGGCCGc -3' miRNA: 3'- -UGGCGaaAGCUGG---------CGgAGUAgCCGGU- -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 28558 | 0.68 | 0.39126 |
Target: 5'- gGCCGCcggccaucgCGGCgCGCa-CGUCGGCCAc -3' miRNA: 3'- -UGGCGaaa------GCUG-GCGgaGUAGCCGGU- -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 34439 | 0.68 | 0.39126 |
Target: 5'- uUCGUgcgCGGCCGugcCCUCGUCGGCgAa -3' miRNA: 3'- uGGCGaaaGCUGGC---GGAGUAGCCGgU- -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 13537 | 0.68 | 0.364666 |
Target: 5'- cGCCGaacugUCGGCCGCCUgAcUCGGUg- -3' miRNA: 3'- -UGGCgaa--AGCUGGCGGAgU-AGCCGgu -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 38551 | 0.68 | 0.364666 |
Target: 5'- gGCCGCUggCcuGCCGCUcgCcgCGGCCGg -3' miRNA: 3'- -UGGCGAaaGc-UGGCGGa-GuaGCCGGU- -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 34877 | 0.69 | 0.339348 |
Target: 5'- gGCCGCcgagCGugCGCUgcaguUCAUCGGCa- -3' miRNA: 3'- -UGGCGaaa-GCugGCGG-----AGUAGCCGgu -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 14105 | 0.69 | 0.331197 |
Target: 5'- aGuuGCUUcuugagguuaUCG-CCGUaCUCGUCGGCCAg -3' miRNA: 3'- -UggCGAA----------AGCuGGCG-GAGUAGCCGGU- -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 19616 | 0.69 | 0.331197 |
Target: 5'- uGCCGUccggggUCaugcgGGCCGCgaCAUCGGCCAg -3' miRNA: 3'- -UGGCGaa----AG-----CUGGCGgaGUAGCCGGU- -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 14659 | 0.69 | 0.331197 |
Target: 5'- cACUGCUgaaaagcggaUCGGCCGCCggCAUCaGCCc -3' miRNA: 3'- -UGGCGAa---------AGCUGGCGGa-GUAGcCGGu -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 3585 | 0.7 | 0.307615 |
Target: 5'- cACCGauccgCGGCCGCCagUGUUGGCCGu -3' miRNA: 3'- -UGGCgaaa-GCUGGCGGa-GUAGCCGGU- -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 36979 | 0.7 | 0.292618 |
Target: 5'- aGCUGCUUgcCGGCCuuguccuugGCCUUGUCGGUCGg -3' miRNA: 3'- -UGGCGAAa-GCUGG---------CGGAGUAGCCGGU- -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 23338 | 0.71 | 0.25107 |
Target: 5'- aGCCGCgcaaUUCGACgGCCUCG-CcGCCGa -3' miRNA: 3'- -UGGCGa---AAGCUGgCGGAGUaGcCGGU- -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 22983 | 0.71 | 0.244637 |
Target: 5'- aGCCGgUcggaUUCGGCuuuCGCCUgGUCGGCCu -3' miRNA: 3'- -UGGCgA----AAGCUG---GCGGAgUAGCCGGu -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 28082 | 0.71 | 0.238342 |
Target: 5'- cGCCGacaugaUCGGCuucuuccagCGCCUCAUCGGCUAc -3' miRNA: 3'- -UGGCgaa---AGCUG---------GCGGAGUAGCCGGU- -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 33053 | 0.71 | 0.238342 |
Target: 5'- cCCGCgugcugUCGugCGCUUCAUCGGgUCGc -3' miRNA: 3'- uGGCGaa----AGCugGCGGAGUAGCC-GGU- -5' |
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26634 | 3' | -57.8 | NC_005808.1 | + | 4886 | 0.72 | 0.220267 |
Target: 5'- cGCgGCga-CGGCgGCCUCGuuuUCGGCCAc -3' miRNA: 3'- -UGgCGaaaGCUGgCGGAGU---AGCCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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