Results 1 - 20 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26634 | 5' | -53.1 | NC_005808.1 | + | 7949 | 0.66 | 0.790271 |
Target: 5'- ---uUUCCGACAGCuuGcCCGugGCCUCg -3' miRNA: 3'- caauAAGGUUGUUGggCcGGC--UGGGG- -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 32373 | 0.67 | 0.704997 |
Target: 5'- -----gCCGAgGcCCCGGCCG-CCCa -3' miRNA: 3'- caauaaGGUUgUuGGGCCGGCuGGGg -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 34356 | 0.67 | 0.716051 |
Target: 5'- --gAUUCCAGCGACUUcGCCGACg-- -3' miRNA: 3'- caaUAAGGUUGUUGGGcCGGCUGggg -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 35957 | 0.67 | 0.716051 |
Target: 5'- -----cCCGGCAACCUGuaCGugUCCg -3' miRNA: 3'- caauaaGGUUGUUGGGCcgGCugGGG- -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 37524 | 0.67 | 0.716051 |
Target: 5'- -cUGUUCCAACcgcaaaaccuGCCgCGGCCuGugCUCa -3' miRNA: 3'- caAUAAGGUUGu---------UGG-GCCGG-CugGGG- -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 687 | 0.67 | 0.727018 |
Target: 5'- ------aCGGCGGCgCCGGCCGGgCCg -3' miRNA: 3'- caauaagGUUGUUG-GGCCGGCUgGGg -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 27501 | 0.67 | 0.737884 |
Target: 5'- -----gCCGGCGGCCuCGGCCG-CCa- -3' miRNA: 3'- caauaaGGUUGUUGG-GCCGGCuGGgg -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 18471 | 0.66 | 0.748637 |
Target: 5'- -----gCCGGCGGCgUCGGCCGAUUCg -3' miRNA: 3'- caauaaGGUUGUUG-GGCCGGCUGGGg -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 26267 | 0.66 | 0.780094 |
Target: 5'- -----cCCGcCGGCCUGGUCGGCUCg -3' miRNA: 3'- caauaaGGUuGUUGGGCCGGCUGGGg -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 28388 | 0.67 | 0.704997 |
Target: 5'- -gUGUUCCAGuuCGACgCCGGCggcgCGGCgCCa -3' miRNA: 3'- caAUAAGGUU--GUUG-GGCCG----GCUGgGG- -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 12014 | 0.67 | 0.704997 |
Target: 5'- -----gCCAGCAGCgCGGCCGugGCCg- -3' miRNA: 3'- caauaaGGUUGUUGgGCCGGC--UGGgg -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 2423 | 0.67 | 0.682674 |
Target: 5'- --gGUguaCGGCAGCa-GGCCGGCCUCg -3' miRNA: 3'- caaUAag-GUUGUUGggCCGGCUGGGG- -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 10436 | 0.72 | 0.402656 |
Target: 5'- ---uUUCCAACAGCuuGGCaauGGCgCCCu -3' miRNA: 3'- caauAAGGUUGUUGggCCGg--CUG-GGG- -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 6386 | 0.71 | 0.461986 |
Target: 5'- -----aUCAggcGCAGgCCGGCCGGCCCg -3' miRNA: 3'- caauaaGGU---UGUUgGGCCGGCUGGGg -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 38503 | 0.71 | 0.472319 |
Target: 5'- ----aUUCAGCGccgcccACCUGGCCGGCCUg -3' miRNA: 3'- caauaAGGUUGU------UGGGCCGGCUGGGg -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 37766 | 0.7 | 0.514752 |
Target: 5'- ---uUUCCGugAAUUCGacgacggcGCCGGCCCCg -3' miRNA: 3'- caauAAGGUugUUGGGC--------CGGCUGGGG- -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 35434 | 0.7 | 0.525605 |
Target: 5'- ----aUCCGACAagcGCCCGGCCcuggucauccaGGCCgCa -3' miRNA: 3'- caauaAGGUUGU---UGGGCCGG-----------CUGGgG- -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 38240 | 0.69 | 0.569801 |
Target: 5'- ----aUCCGccuGCcgUCCGGCCGAUUCCu -3' miRNA: 3'- caauaAGGU---UGuuGGGCCGGCUGGGG- -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 30015 | 0.69 | 0.603539 |
Target: 5'- ----cUCCAACuGCaCGGCCGcgcccuugguGCCCCa -3' miRNA: 3'- caauaAGGUUGuUGgGCCGGC----------UGGGG- -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 34928 | 0.69 | 0.61485 |
Target: 5'- -----gCCGACGACCUGGCC--CCCg -3' miRNA: 3'- caauaaGGUUGUUGGGCCGGcuGGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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