miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26634 5' -53.1 NC_005808.1 + 1260 1.13 0.000706
Target:  5'- gGUUAUUCCAACAACCCGGCCGACCCCg -3'
miRNA:   3'- -CAAUAAGGUUGUUGGGCCGGCUGGGG- -5'
26634 5' -53.1 NC_005808.1 + 27335 0.77 0.224074
Target:  5'- cGUUGcuUUCCAcguaGGCCgGGCCGACCUCg -3'
miRNA:   3'- -CAAU--AAGGUug--UUGGgCCGGCUGGGG- -5'
26634 5' -53.1 NC_005808.1 + 4717 0.75 0.284486
Target:  5'- -----gCCAACAACCUGuccgaucuuGCCGACCCUg -3'
miRNA:   3'- caauaaGGUUGUUGGGC---------CGGCUGGGG- -5'
26634 5' -53.1 NC_005808.1 + 4675 0.74 0.348389
Target:  5'- -----gCCAACAuugGCCUGGCUGACCUg -3'
miRNA:   3'- caauaaGGUUGU---UGGGCCGGCUGGGg -5'
26634 5' -53.1 NC_005808.1 + 21328 0.73 0.365886
Target:  5'- cUUAcgCCGACAugCUGGgcaUCGACCCCg -3'
miRNA:   3'- cAAUaaGGUUGUugGGCC---GGCUGGGG- -5'
26634 5' -53.1 NC_005808.1 + 12339 0.73 0.381228
Target:  5'- -cUGggCCAGCAACCCGcccaggacacuaccGCCGAUCCg -3'
miRNA:   3'- caAUaaGGUUGUUGGGC--------------CGGCUGGGg -5'
26634 5' -53.1 NC_005808.1 + 29328 0.73 0.383979
Target:  5'- ----gUCCAcccCGACaCCGGCCGGCCUUa -3'
miRNA:   3'- caauaAGGUu--GUUG-GGCCGGCUGGGG- -5'
26634 5' -53.1 NC_005808.1 + 10436 0.72 0.402656
Target:  5'- ---uUUCCAACAGCuuGGCaauGGCgCCCu -3'
miRNA:   3'- caauAAGGUUGUUGggCCGg--CUG-GGG- -5'
26634 5' -53.1 NC_005808.1 + 8873 0.72 0.445705
Target:  5'- -----cCCAGCAgaucgguacugaccgGCgCGGCCGACCCa -3'
miRNA:   3'- caauaaGGUUGU---------------UGgGCCGGCUGGGg -5'
26634 5' -53.1 NC_005808.1 + 6386 0.71 0.461986
Target:  5'- -----aUCAggcGCAGgCCGGCCGGCCCg -3'
miRNA:   3'- caauaaGGU---UGUUgGGCCGGCUGGGg -5'
26634 5' -53.1 NC_005808.1 + 15318 0.71 0.472319
Target:  5'- -cUGUUUguGCGGCa-GGCCGACCCUc -3'
miRNA:   3'- caAUAAGguUGUUGggCCGGCUGGGG- -5'
26634 5' -53.1 NC_005808.1 + 38503 0.71 0.472319
Target:  5'- ----aUUCAGCGccgcccACCUGGCCGGCCUg -3'
miRNA:   3'- caauaAGGUUGU------UGGGCCGGCUGGGg -5'
26634 5' -53.1 NC_005808.1 + 27912 0.71 0.482768
Target:  5'- --cGUUCuugagCAGCGGCgCGGCCGGCgCCa -3'
miRNA:   3'- caaUAAG-----GUUGUUGgGCCGGCUGgGG- -5'
26634 5' -53.1 NC_005808.1 + 768 0.7 0.50399
Target:  5'- ----aUCCugGGCGguaucuugggcGCCCGGCCGGCgCCg -3'
miRNA:   3'- caauaAGG--UUGU-----------UGGGCCGGCUGgGG- -5'
26634 5' -53.1 NC_005808.1 + 14599 0.7 0.50399
Target:  5'- uGUUGUccggcgCCGGCGACgUGGCUGAUUCCu -3'
miRNA:   3'- -CAAUAa-----GGUUGUUGgGCCGGCUGGGG- -5'
26634 5' -53.1 NC_005808.1 + 11853 0.7 0.514752
Target:  5'- -----cCCAACAAUCUGGUCGGCaCCa -3'
miRNA:   3'- caauaaGGUUGUUGGGCCGGCUGgGG- -5'
26634 5' -53.1 NC_005808.1 + 37766 0.7 0.514752
Target:  5'- ---uUUCCGugAAUUCGacgacggcGCCGGCCCCg -3'
miRNA:   3'- caauAAGGUugUUGGGC--------CGGCUGGGG- -5'
26634 5' -53.1 NC_005808.1 + 24642 0.7 0.525605
Target:  5'- -----cCgGACGGCCCgaccguGGCCGGCCUCg -3'
miRNA:   3'- caauaaGgUUGUUGGG------CCGGCUGGGG- -5'
26634 5' -53.1 NC_005808.1 + 41398 0.7 0.525605
Target:  5'- ----gUCCGGCGAgcgccgguauuCCCGGCCagcGACCCa -3'
miRNA:   3'- caauaAGGUUGUU-----------GGGCCGG---CUGGGg -5'
26634 5' -53.1 NC_005808.1 + 35434 0.7 0.525605
Target:  5'- ----aUCCGACAagcGCCCGGCCcuggucauccaGGCCgCa -3'
miRNA:   3'- caauaAGGUUGU---UGGGCCGG-----------CUGGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.