Results 21 - 40 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26634 | 5' | -53.1 | NC_005808.1 | + | 23497 | 0.7 | 0.525605 |
Target: 5'- ----aUCC-GCAuCCCGGCCGGCgUCg -3' miRNA: 3'- caauaAGGuUGUuGGGCCGGCUGgGG- -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 35434 | 0.7 | 0.525605 |
Target: 5'- ----aUCCGACAagcGCCCGGCCcuggucauccaGGCCgCa -3' miRNA: 3'- caauaAGGUUGU---UGGGCCGG-----------CUGGgG- -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 24642 | 0.7 | 0.525605 |
Target: 5'- -----cCgGACGGCCCgaccguGGCCGGCCUCg -3' miRNA: 3'- caauaaGgUUGUUGGG------CCGGCUGGGG- -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 18136 | 0.7 | 0.558651 |
Target: 5'- ----cUUCGGCGGCCCaGCaCGcACCCCg -3' miRNA: 3'- caauaAGGUUGUUGGGcCG-GC-UGGGG- -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 38240 | 0.69 | 0.569801 |
Target: 5'- ----aUCCGccuGCcgUCCGGCCGAUUCCu -3' miRNA: 3'- caauaAGGU---UGuuGGGCCGGCUGGGG- -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 11349 | 0.69 | 0.581005 |
Target: 5'- ---uUUCCGcCuACCUGGCCGAgcgUCCCa -3' miRNA: 3'- caauAAGGUuGuUGGGCCGGCU---GGGG- -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 38509 | 0.69 | 0.592254 |
Target: 5'- -gUGUaCCGACAGCacgaucugguagCCGGCCG-CCUCg -3' miRNA: 3'- caAUAaGGUUGUUG------------GGCCGGCuGGGG- -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 30415 | 0.69 | 0.592254 |
Target: 5'- --gGUUCUcgcgcGACGACaaGGCCaaaGACCCCg -3' miRNA: 3'- caaUAAGG-----UUGUUGggCCGG---CUGGGG- -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 30015 | 0.69 | 0.603539 |
Target: 5'- ----cUCCAACuGCaCGGCCGcgcccuugguGCCCCa -3' miRNA: 3'- caauaAGGUUGuUGgGCCGGC----------UGGGG- -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 32545 | 0.69 | 0.603539 |
Target: 5'- --gAUUCgGGCGcaUCGGCCGcCCCCa -3' miRNA: 3'- caaUAAGgUUGUugGGCCGGCuGGGG- -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 677 | 0.69 | 0.603539 |
Target: 5'- ----gUCC-ACGGCgcugCUGGCCGACCCg -3' miRNA: 3'- caauaAGGuUGUUG----GGCCGGCUGGGg -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 34928 | 0.69 | 0.61485 |
Target: 5'- -----gCCGACGACCUGGCC--CCCg -3' miRNA: 3'- caauaaGGUUGUUGGGCCGGcuGGGg -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 5820 | 0.68 | 0.626176 |
Target: 5'- gGUUAUccaaaUCCAGCAACUCGccgacaaacuuaGCCGAaccgugcaggcCCCCa -3' miRNA: 3'- -CAAUA-----AGGUUGUUGGGC------------CGGCU-----------GGGG- -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 29750 | 0.68 | 0.637509 |
Target: 5'- --aGUUCCGAUuuucaAACacaCGGCCGcGCCCUg -3' miRNA: 3'- caaUAAGGUUG-----UUGg--GCCGGC-UGGGG- -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 13174 | 0.68 | 0.637509 |
Target: 5'- -----gCCGGCAACCCGGaaCGGCUCa -3' miRNA: 3'- caauaaGGUUGUUGGGCCg-GCUGGGg -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 7624 | 0.68 | 0.647704 |
Target: 5'- ----aUCCGauuaaguACGACCCGGCCGcgaGCCa- -3' miRNA: 3'- caauaAGGU-------UGUUGGGCCGGC---UGGgg -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 20323 | 0.68 | 0.648836 |
Target: 5'- -----gCCAACAGCagcaaCaGCCGACCCa -3' miRNA: 3'- caauaaGGUUGUUGg----GcCGGCUGGGg -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 2423 | 0.67 | 0.682674 |
Target: 5'- --gGUguaCGGCAGCa-GGCCGGCCUCg -3' miRNA: 3'- caaUAag-GUUGUUGggCCGGCUGGGG- -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 7124 | 0.67 | 0.682674 |
Target: 5'- -----gUCAugAaguACCUGGCCG-CCCCg -3' miRNA: 3'- caauaaGGUugU---UGGGCCGGCuGGGG- -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 34464 | 0.67 | 0.687158 |
Target: 5'- cGUUcgUCagCGACAuggcggccaguucguGCgCGGCCGugCCCu -3' miRNA: 3'- -CAAuaAG--GUUGU---------------UGgGCCGGCugGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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