Results 41 - 60 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26635 | 3' | -65.8 | NC_005808.1 | + | 25415 | 0.67 | 0.158951 |
Target: 5'- -gGCCGGcuaugcgaaCugGCCGGCCUGgacaauccCGGCGAc -3' miRNA: 3'- agCGGCC---------GugCGGCCGGGU--------GCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 24519 | 0.67 | 0.150415 |
Target: 5'- gUCGUCGGCGucaauguCGCCGaGgCCGCGcGCGGc -3' miRNA: 3'- -AGCGGCCGU-------GCGGC-CgGGUGC-CGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 25148 | 0.67 | 0.176427 |
Target: 5'- gCGCCgGGCGCGCUGcGCUgggUGGCGAu -3' miRNA: 3'- aGCGG-CCGUGCGGC-CGGgu-GCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 35289 | 0.67 | 0.158951 |
Target: 5'- uUCGuCCaGCG-GCgGGCaCCGCGGCGAc -3' miRNA: 3'- -AGC-GGcCGUgCGgCCG-GGUGCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 4876 | 0.67 | 0.154426 |
Target: 5'- gUCGCCGGCcagcaaucccgcaGCGCCaGCCgGCGuGCu-- -3' miRNA: 3'- -AGCGGCCG-------------UGCGGcCGGgUGC-CGcuu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 38095 | 0.67 | 0.171904 |
Target: 5'- gUCGCCgaGGCGCuGCuCGGUgCGCcaGGCGAGg -3' miRNA: 3'- -AGCGG--CCGUG-CG-GCCGgGUG--CCGCUU- -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 8178 | 0.67 | 0.150811 |
Target: 5'- aCGCCGGC-CGCgCGGUgCAgGGCc-- -3' miRNA: 3'- aGCGGCCGuGCG-GCCGgGUgCCGcuu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 36275 | 0.67 | 0.154833 |
Target: 5'- -gGUCGGC-CGCCGcggcGCCCuCGGUGAu -3' miRNA: 3'- agCGGCCGuGCGGC----CGGGuGCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 26318 | 0.67 | 0.154833 |
Target: 5'- -gGCCGGCGggUGcCCGuGCCUuCGGCGAc -3' miRNA: 3'- agCGGCCGU--GC-GGC-CGGGuGCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 13078 | 0.67 | 0.171904 |
Target: 5'- gUCGCCacuGCGCuGCgCGGCCUguacgagaACGGCGGg -3' miRNA: 3'- -AGCGGc--CGUG-CG-GCCGGG--------UGCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 40635 | 0.67 | 0.176427 |
Target: 5'- gCaCCGGCAUaCCGGCCgccuCGGCGAc -3' miRNA: 3'- aGcGGCCGUGcGGCCGGgu--GCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 18143 | 0.67 | 0.178266 |
Target: 5'- gCGCCGGCuuCGgCGGCCCAgcacgcaccccgcgcCGGUa-- -3' miRNA: 3'- aGCGGCCGu-GCgGCCGGGU---------------GCCGcuu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 18469 | 0.67 | 0.154833 |
Target: 5'- gCGCCGGCgGCGUCGGCcgauucguCCACcGUGAu -3' miRNA: 3'- aGCGGCCG-UGCGGCCG--------GGUGcCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 27422 | 0.67 | 0.150811 |
Target: 5'- gCGCCuGGCGCaCCGcGCCCgGCGGCc-- -3' miRNA: 3'- aGCGG-CCGUGcGGC-CGGG-UGCCGcuu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 27701 | 0.67 | 0.163168 |
Target: 5'- -gGCC-GCGCGCCGGCa-GCGGCu-- -3' miRNA: 3'- agCGGcCGUGCGGCCGggUGCCGcuu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 12349 | 0.67 | 0.167485 |
Target: 5'- -aGCCGGCACGCUGGgCCA--GCa-- -3' miRNA: 3'- agCGGCCGUGCGGCCgGGUgcCGcuu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 41510 | 0.68 | 0.145341 |
Target: 5'- cCGCCGccaacaugaaguacGCGCGCCGGgucgcacaggaaaUCCGCGaGCGAAu -3' miRNA: 3'- aGCGGC--------------CGUGCGGCC-------------GGGUGC-CGCUU- -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 21274 | 0.68 | 0.143052 |
Target: 5'- aUGUCGGCGuaagUGUCGGCCCAgCGGuCGGc -3' miRNA: 3'- aGCGGCCGU----GCGGCCGGGU-GCC-GCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 5203 | 0.68 | 0.139311 |
Target: 5'- aUUGCCGGCua-CCGuGCCCACGuCGAGg -3' miRNA: 3'- -AGCGGCCGugcGGC-CGGGUGCcGCUU- -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 34930 | 0.68 | 0.143052 |
Target: 5'- aCGCuCGGCG-GCCGGCUUGCuguuGGCGAc -3' miRNA: 3'- aGCG-GCCGUgCGGCCGGGUG----CCGCUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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