miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26635 3' -65.8 NC_005808.1 + 16802 0.66 0.181056
Target:  5'- gUUGCCaGUugGUCGcGCCCA-GGCGGc -3'
miRNA:   3'- -AGCGGcCGugCGGC-CGGGUgCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 6377 0.66 0.186271
Target:  5'- aCGUCGGCAaucaggcgcaggccgGCCGGCCCgguguagucGCGGCc-- -3'
miRNA:   3'- aGCGGCCGUg--------------CGGCCGGG---------UGCCGcuu -5'
26635 3' -65.8 NC_005808.1 + 6244 0.66 0.190637
Target:  5'- -gGCCuGCACGCCGGUa-ACGGUGc- -3'
miRNA:   3'- agCGGcCGUGCGGCCGggUGCCGCuu -5'
26635 3' -65.8 NC_005808.1 + 11835 0.66 0.190637
Target:  5'- -aGaCCGGcCGCGCCGcgguuGgCCugGGCGAAc -3'
miRNA:   3'- agC-GGCC-GUGCGGC-----CgGGugCCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 25684 0.66 0.190637
Target:  5'- -aGCCGGCggauuucggcaACGCUGcucauaccaGcCCCGCGGCGGGg -3'
miRNA:   3'- agCGGCCG-----------UGCGGC---------C-GGGUGCCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 31026 0.66 0.185792
Target:  5'- cUUGCCGGCcgaggcaaucGCGCgGGCCaACGugcGCGAAg -3'
miRNA:   3'- -AGCGGCCG----------UGCGgCCGGgUGC---CGCUU- -5'
26635 3' -65.8 NC_005808.1 + 41324 0.67 0.163168
Target:  5'- gUCGCUGGCcgggaauaccgGCGCUcGCCgGaCGGCGGAa -3'
miRNA:   3'- -AGCGGCCG-----------UGCGGcCGGgU-GCCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 22078 0.67 0.167485
Target:  5'- -gGUCGGCGCG-CGGCUCgAUGGCGu- -3'
miRNA:   3'- agCGGCCGUGCgGCCGGG-UGCCGCuu -5'
26635 3' -65.8 NC_005808.1 + 4876 0.67 0.154426
Target:  5'- gUCGCCGGCcagcaaucccgcaGCGCCaGCCgGCGuGCu-- -3'
miRNA:   3'- -AGCGGCCG-------------UGCGGcCGGgUGC-CGcuu -5'
26635 3' -65.8 NC_005808.1 + 24012 0.67 0.176427
Target:  5'- -gGUgGGCGCGUCGGCCaauuCaGCGAAg -3'
miRNA:   3'- agCGgCCGUGCGGCCGGgu--GcCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 25733 0.67 0.170124
Target:  5'- cCGCCGGCugaugacguacaugACGCCGGCagaacugCCGaGGUGGAc -3'
miRNA:   3'- aGCGGCCG--------------UGCGGCCG-------GGUgCCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 24519 0.67 0.150415
Target:  5'- gUCGUCGGCGucaauguCGCCGaGgCCGCGcGCGGc -3'
miRNA:   3'- -AGCGGCCGU-------GCGGC-CgGGUGC-CGCUu -5'
26635 3' -65.8 NC_005808.1 + 8178 0.67 0.150811
Target:  5'- aCGCCGGC-CGCgCGGUgCAgGGCc-- -3'
miRNA:   3'- aGCGGCCGuGCG-GCCGgGUgCCGcuu -5'
26635 3' -65.8 NC_005808.1 + 26318 0.67 0.154833
Target:  5'- -gGCCGGCGggUGcCCGuGCCUuCGGCGAc -3'
miRNA:   3'- agCGGCCGU--GC-GGC-CGGGuGCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 35289 0.67 0.158951
Target:  5'- uUCGuCCaGCG-GCgGGCaCCGCGGCGAc -3'
miRNA:   3'- -AGC-GGcCGUgCGgCCG-GGUGCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 25415 0.67 0.158951
Target:  5'- -gGCCGGcuaugcgaaCugGCCGGCCUGgacaauccCGGCGAc -3'
miRNA:   3'- agCGGCC---------GugCGGCCGGGU--------GCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 11487 0.67 0.163168
Target:  5'- gCGaCCuGCACGCCGGCUCGCcGCu-- -3'
miRNA:   3'- aGC-GGcCGUGCGGCCGGGUGcCGcuu -5'
26635 3' -65.8 NC_005808.1 + 28730 0.67 0.163168
Target:  5'- gCGCUGGCGaggcCGCCGGCaCCGaucUGGCa-- -3'
miRNA:   3'- aGCGGCCGU----GCGGCCG-GGU---GCCGcuu -5'
26635 3' -65.8 NC_005808.1 + 2621 0.67 0.163168
Target:  5'- -aGCCGGCAauuacgaGCgCGGCCCcuACcGCGAAu -3'
miRNA:   3'- agCGGCCGUg------CG-GCCGGG--UGcCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 12349 0.67 0.167485
Target:  5'- -aGCCGGCACGCUGGgCCA--GCa-- -3'
miRNA:   3'- agCGGCCGUGCGGCCgGGUgcCGcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.