Results 21 - 40 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26635 | 3' | -65.8 | NC_005808.1 | + | 7528 | 0.69 | 0.12192 |
Target: 5'- gCGuCCGaguguucuuccGCACGCUGGCUCGCGGcCGGGu -3' miRNA: 3'- aGC-GGC-----------CGUGCGGCCGGGUGCC-GCUU- -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 7652 | 0.68 | 0.127594 |
Target: 5'- aCGCCGGCuccuugccguacacGCGCCGuuCUuugGCGGCGAu -3' miRNA: 3'- aGCGGCCG--------------UGCGGCcgGG---UGCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 7784 | 0.66 | 0.200659 |
Target: 5'- gCGCCGGCGuccacccuuCGCC-GCCCAgcaGGCGc- -3' miRNA: 3'- aGCGGCCGU---------GCGGcCGGGUg--CCGCuu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 8178 | 0.67 | 0.150811 |
Target: 5'- aCGCCGGC-CGCgCGGUgCAgGGCc-- -3' miRNA: 3'- aGCGGCCGuGCG-GCCGgGUgCCGcuu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 8207 | 0.66 | 0.195592 |
Target: 5'- gCGCaCGGCcucguagucGCGCUGGUCgGCGGCc-- -3' miRNA: 3'- aGCG-GCCG---------UGCGGCCGGgUGCCGcuu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 8908 | 0.68 | 0.143052 |
Target: 5'- -gGCCaaCGCGCUGGCCCGCGuuGCGGc -3' miRNA: 3'- agCGGccGUGCGGCCGGGUGC--CGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 9067 | 0.66 | 0.185792 |
Target: 5'- cCGCCuGCugGaaGcGCCCccgcGCGGCGAGg -3' miRNA: 3'- aGCGGcCGugCggC-CGGG----UGCCGCUU- -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 9240 | 0.72 | 0.065097 |
Target: 5'- gUCGaCGGCGCcaaguugucgcuGCCGGCCCucaaggaaauguACGGCGAGg -3' miRNA: 3'- -AGCgGCCGUG------------CGGCCGGG------------UGCCGCUU- -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 9329 | 0.71 | 0.078954 |
Target: 5'- aCGUCGGCGCGgCGGgCgGCGGCa-- -3' miRNA: 3'- aGCGGCCGUGCgGCCgGgUGCCGcuu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 10196 | 0.76 | 0.034249 |
Target: 5'- aCGUCaagcGCACGCCGGCCCGaugguCGGCGGAu -3' miRNA: 3'- aGCGGc---CGUGCGGCCGGGU-----GCCGCUU- -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 10927 | 0.68 | 0.125229 |
Target: 5'- cCGCCGGUuuGCagGGCCUcgggcaguugcGCGGCGAc -3' miRNA: 3'- aGCGGCCGugCGg-CCGGG-----------UGCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 11005 | 0.68 | 0.13566 |
Target: 5'- gUCGCCGcGCAacUGCCcgaGGCCCugcaaacCGGCGGg -3' miRNA: 3'- -AGCGGC-CGU--GCGG---CCGGGu------GCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 11277 | 0.71 | 0.085721 |
Target: 5'- gCGCUGGgACGCuCGGCCagguaGGCGGAa -3' miRNA: 3'- aGCGGCCgUGCG-GCCGGgug--CCGCUU- -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 11487 | 0.67 | 0.163168 |
Target: 5'- gCGaCCuGCACGCCGGCUCGCcGCu-- -3' miRNA: 3'- aGC-GGcCGUGCGGCCGGGUGcCGcuu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 11671 | 0.73 | 0.054201 |
Target: 5'- cCGCUGGCACugcuGCCcggcggccagccggcGGCCCugGGCGGc -3' miRNA: 3'- aGCGGCCGUG----CGG---------------CCGGGugCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 11835 | 0.66 | 0.190637 |
Target: 5'- -aGaCCGGcCGCGCCGcgguuGgCCugGGCGAAc -3' miRNA: 3'- agC-GGCC-GUGCGGC-----CgGGugCCGCUU- -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 12096 | 0.66 | 0.195592 |
Target: 5'- aCGCUgGGCAagaccuCGCCGGCC-ACGGCc-- -3' miRNA: 3'- aGCGG-CCGU------GCGGCCGGgUGCCGcuu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 12285 | 0.67 | 0.158951 |
Target: 5'- gUUGCUGGCccagcgUGCCGG-CUACGGCGGc -3' miRNA: 3'- -AGCGGCCGu-----GCGGCCgGGUGCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 12349 | 0.67 | 0.167485 |
Target: 5'- -aGCCGGCACGCUGGgCCA--GCa-- -3' miRNA: 3'- agCGGCCGUGCGGCCgGGUgcCGcuu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 12550 | 0.7 | 0.103438 |
Target: 5'- gCGUCGGUGaauuucuUGCCGGCCUcgcgcugcGCGGCGAu -3' miRNA: 3'- aGCGGCCGU-------GCGGCCGGG--------UGCCGCUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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