miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26635 3' -65.8 NC_005808.1 + 18562 0.7 0.090536
Target:  5'- aCGUCGGUggAgGCCGcGCUCGCGGUGAc -3'
miRNA:   3'- aGCGGCCG--UgCGGC-CGGGUGCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 12679 0.7 0.093038
Target:  5'- aUGCCGaGCGCGUCGGCgCCAUGcGCa-- -3'
miRNA:   3'- aGCGGC-CGUGCGGCCG-GGUGC-CGcuu -5'
26635 3' -65.8 NC_005808.1 + 24433 0.7 0.093038
Target:  5'- uUUGUCGGUgccGCGCgCGGCCU-CGGCGAc -3'
miRNA:   3'- -AGCGGCCG---UGCG-GCCGGGuGCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 40706 0.7 0.093038
Target:  5'- -gGUCGaGCGCG-CGGCCCugGGgGAAg -3'
miRNA:   3'- agCGGC-CGUGCgGCCGGGugCCgCUU- -5'
26635 3' -65.8 NC_005808.1 + 14905 0.7 0.098242
Target:  5'- gCGCUGGC-CGCCaacGGCaucgaCCugGGCGAAg -3'
miRNA:   3'- aGCGGCCGuGCGG---CCG-----GGugCCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 4759 0.7 0.100945
Target:  5'- cUUGCCGGCcauucuCGCCGGCUaucCGGCGc- -3'
miRNA:   3'- -AGCGGCCGu-----GCGGCCGGgu-GCCGCuu -5'
26635 3' -65.8 NC_005808.1 + 27518 0.7 0.100945
Target:  5'- gCGCUGGCauaccaGCGCCagGGCCUGCGGCc-- -3'
miRNA:   3'- aGCGGCCG------UGCGG--CCGGGUGCCGcuu -5'
26635 3' -65.8 NC_005808.1 + 16129 0.7 0.100945
Target:  5'- gCGCCGcGCGCGgCGGCCaCGUGcGCGAAc -3'
miRNA:   3'- aGCGGC-CGUGCgGCCGG-GUGC-CGCUU- -5'
26635 3' -65.8 NC_005808.1 + 12550 0.7 0.103438
Target:  5'- gCGUCGGUGaauuucuUGCCGGCCUcgcgcugcGCGGCGAu -3'
miRNA:   3'- aGCGGCCGU-------GCGGCCGGG--------UGCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 41609 0.7 0.103719
Target:  5'- gCGCgGGCA-GCgGGCUgACGGUGAAg -3'
miRNA:   3'- aGCGgCCGUgCGgCCGGgUGCCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 7153 0.69 0.106564
Target:  5'- gCGUgGGCGCGCCGuggguaGgCCGCGGCGu- -3'
miRNA:   3'- aGCGgCCGUGCGGC------CgGGUGCCGCuu -5'
26635 3' -65.8 NC_005808.1 + 24140 0.69 0.106564
Target:  5'- -aGCCGGCugcGCGCCuGGCCCagcgccucgACGGCu-- -3'
miRNA:   3'- agCGGCCG---UGCGG-CCGGG---------UGCCGcuu -5'
26635 3' -65.8 NC_005808.1 + 1294 0.69 0.109482
Target:  5'- cCGCCcaCAcCGCCGcGCCCAgGGCGAc -3'
miRNA:   3'- aGCGGccGU-GCGGC-CGGGUgCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 24765 0.69 0.112173
Target:  5'- cCGaCUGGCACcgauggacaGCCugggcguggacguGGCCCGCGGCGGg -3'
miRNA:   3'- aGC-GGCCGUG---------CGG-------------CCGGGUGCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 28553 0.69 0.118693
Target:  5'- cUUG-CGGC-CGCCGGCCauCGCGGCGc- -3'
miRNA:   3'- -AGCgGCCGuGCGGCCGG--GUGCCGCuu -5'
26635 3' -65.8 NC_005808.1 + 31971 0.69 0.12192
Target:  5'- aCGCCgcaGGCAC-UCGGCCUcgAUGGCGGAa -3'
miRNA:   3'- aGCGG---CCGUGcGGCCGGG--UGCCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 7528 0.69 0.12192
Target:  5'- gCGuCCGaguguucuuccGCACGCUGGCUCGCGGcCGGGu -3'
miRNA:   3'- aGC-GGC-----------CGUGCGGCCGGGUGCC-GCUU- -5'
26635 3' -65.8 NC_005808.1 + 23568 0.69 0.12192
Target:  5'- aUCGCCGGCAggUGCgGGCggGgGGCGAc -3'
miRNA:   3'- -AGCGGCCGU--GCGgCCGggUgCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 21382 0.69 0.12192
Target:  5'- gUCGCaauGGCGCGCUgGGCCUGC-GCGAGc -3'
miRNA:   3'- -AGCGg--CCGUGCGG-CCGGGUGcCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 10927 0.68 0.125229
Target:  5'- cCGCCGGUuuGCagGGCCUcgggcaguugcGCGGCGAc -3'
miRNA:   3'- aGCGGCCGugCGg-CCGGG-----------UGCCGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.