Results 21 - 40 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26635 | 3' | -65.8 | NC_005808.1 | + | 20955 | 0.66 | 0.185313 |
Target: 5'- gUUGCCGGCA-GUCGGUuccguggucgaaaUCACGGCGc- -3' miRNA: 3'- -AGCGGCCGUgCGGCCG-------------GGUGCCGCuu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 604 | 0.66 | 0.18436 |
Target: 5'- cCGCCuGCGgGUCGGCCagcagcgccguggaCACGGCGu- -3' miRNA: 3'- aGCGGcCGUgCGGCCGG--------------GUGCCGCuu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 37083 | 0.66 | 0.181056 |
Target: 5'- -gGCCGGCAUaCUccacgaauuuGGCCCAcuCGGCGGGg -3' miRNA: 3'- agCGGCCGUGcGG----------CCGGGU--GCCGCUU- -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 25978 | 0.66 | 0.181056 |
Target: 5'- uUCcUCGGUuuccuCGCCGGUCUGCGGCGu- -3' miRNA: 3'- -AGcGGCCGu----GCGGCCGGGUGCCGCuu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 16802 | 0.66 | 0.181056 |
Target: 5'- gUUGCCaGUugGUCGcGCCCA-GGCGGc -3' miRNA: 3'- -AGCGGcCGugCGGC-CGGGUgCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 1706 | 0.66 | 0.181056 |
Target: 5'- uUCGCC-GUggGCCGGCgUGCcGGCGAGg -3' miRNA: 3'- -AGCGGcCGugCGGCCGgGUG-CCGCUU- -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 18143 | 0.67 | 0.178266 |
Target: 5'- gCGCCGGCuuCGgCGGCCCAgcacgcaccccgcgcCGGUa-- -3' miRNA: 3'- aGCGGCCGu-GCgGCCGGGU---------------GCCGcuu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 40635 | 0.67 | 0.176427 |
Target: 5'- gCaCCGGCAUaCCGGCCgccuCGGCGAc -3' miRNA: 3'- aGcGGCCGUGcGGCCGGgu--GCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 24697 | 0.67 | 0.176427 |
Target: 5'- cCGCCGGCACGCCauguGGUUCgACGuGCc-- -3' miRNA: 3'- aGCGGCCGUGCGG----CCGGG-UGC-CGcuu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 24012 | 0.67 | 0.176427 |
Target: 5'- -gGUgGGCGCGUCGGCCaauuCaGCGAAg -3' miRNA: 3'- agCGgCCGUGCGGCCGGgu--GcCGCUU- -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 25148 | 0.67 | 0.176427 |
Target: 5'- gCGCCgGGCGCGCUGcGCUgggUGGCGAu -3' miRNA: 3'- aGCGG-CCGUGCGGC-CGGgu-GCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 40716 | 0.67 | 0.171904 |
Target: 5'- uUCGCCcacccGGCcaGCGCCGGCC-ACGGgcUGAAc -3' miRNA: 3'- -AGCGG-----CCG--UGCGGCCGGgUGCC--GCUU- -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 23091 | 0.67 | 0.171904 |
Target: 5'- cUCGCCccgACGCCaacggcggcGCCCACGGCGAc -3' miRNA: 3'- -AGCGGccgUGCGGc--------CGGGUGCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 13078 | 0.67 | 0.171904 |
Target: 5'- gUCGCCacuGCGCuGCgCGGCCUguacgagaACGGCGGg -3' miRNA: 3'- -AGCGGc--CGUG-CG-GCCGGG--------UGCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 38095 | 0.67 | 0.171904 |
Target: 5'- gUCGCCgaGGCGCuGCuCGGUgCGCcaGGCGAGg -3' miRNA: 3'- -AGCGG--CCGUG-CG-GCCGgGUG--CCGCUU- -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 27808 | 0.67 | 0.170567 |
Target: 5'- -aGCCGcagcacguccucgcGCGCGCU-GCCCGCGGUGGc -3' miRNA: 3'- agCGGC--------------CGUGCGGcCGGGUGCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 25733 | 0.67 | 0.170124 |
Target: 5'- cCGCCGGCugaugacguacaugACGCCGGCagaacugCCGaGGUGGAc -3' miRNA: 3'- aGCGGCCG--------------UGCGGCCG-------GGUgCCGCUU- -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 22078 | 0.67 | 0.167485 |
Target: 5'- -gGUCGGCGCG-CGGCUCgAUGGCGu- -3' miRNA: 3'- agCGGCCGUGCgGCCGGG-UGCCGCuu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 12349 | 0.67 | 0.167485 |
Target: 5'- -aGCCGGCACGCUGGgCCA--GCa-- -3' miRNA: 3'- agCGGCCGUGCGGCCgGGUgcCGcuu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 28730 | 0.67 | 0.163168 |
Target: 5'- gCGCUGGCGaggcCGCCGGCaCCGaucUGGCa-- -3' miRNA: 3'- aGCGGCCGU----GCGGCCG-GGU---GCCGcuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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