miRNA display CGI


Results 1 - 20 of 118 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26635 3' -65.8 NC_005808.1 + 185 0.68 0.132097
Target:  5'- gUCGCUgGGCACcgucacgcuGCCGGgCgaCACGGCGAAc -3'
miRNA:   3'- -AGCGG-CCGUG---------CGGCCgG--GUGCCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 604 0.66 0.18436
Target:  5'- cCGCCuGCGgGUCGGCCagcagcgccguggaCACGGCGu- -3'
miRNA:   3'- aGCGGcCGUgCGGCCGG--------------GUGCCGCuu -5'
26635 3' -65.8 NC_005808.1 + 691 0.78 0.021194
Target:  5'- aCGCCGG-ACGCCGuGUCCACGGCGc- -3'
miRNA:   3'- aGCGGCCgUGCGGC-CGGGUGCCGCuu -5'
26635 3' -65.8 NC_005808.1 + 1132 0.7 0.088097
Target:  5'- cCGCgCGcGUuacuggACGCCGGUUCGCGGCGAc -3'
miRNA:   3'- aGCG-GC-CG------UGCGGCCGGGUGCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 1294 0.69 0.109482
Target:  5'- cCGCCcaCAcCGCCGcGCCCAgGGCGAc -3'
miRNA:   3'- aGCGGccGU-GCGGC-CGGGUgCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 1706 0.66 0.181056
Target:  5'- uUCGCC-GUggGCCGGCgUGCcGGCGAGg -3'
miRNA:   3'- -AGCGGcCGugCGGCCGgGUG-CCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 1773 1.05 0.000135
Target:  5'- cUCGCCGGCACGCCGGCCCACGGCGAAu -3'
miRNA:   3'- -AGCGGCCGUGCGGCCGGGUGCCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 2621 0.67 0.163168
Target:  5'- -aGCCGGCAauuacgaGCgCGGCCCcuACcGCGAAu -3'
miRNA:   3'- agCGGCCGUg------CG-GCCGGG--UGcCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 3949 0.68 0.143052
Target:  5'- uUCGgCGGCGacggcaGCgCGGCCUACaGCGAc -3'
miRNA:   3'- -AGCgGCCGUg-----CG-GCCGGGUGcCGCUu -5'
26635 3' -65.8 NC_005808.1 + 4075 0.66 0.195592
Target:  5'- aCGCUGGUG-GCCGGCgcguUUugGGCGGAc -3'
miRNA:   3'- aGCGGCCGUgCGGCCG----GGugCCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 4273 0.72 0.063144
Target:  5'- gCGCCGGCAUggugaugGCCGuGUCgGCGGUGAAc -3'
miRNA:   3'- aGCGGCCGUG-------CGGC-CGGgUGCCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 4678 0.67 0.163168
Target:  5'- gCaCCaGCGCGCCGGauagCGCGGCGAGa -3'
miRNA:   3'- aGcGGcCGUGCGGCCgg--GUGCCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 4759 0.7 0.100945
Target:  5'- cUUGCCGGCcauucuCGCCGGCUaucCGGCGc- -3'
miRNA:   3'- -AGCGGCCGu-----GCGGCCGGgu-GCCGCuu -5'
26635 3' -65.8 NC_005808.1 + 4791 0.71 0.07473
Target:  5'- gCGCCcaGCACGCCGGCUgGCGcuGCGGGa -3'
miRNA:   3'- aGCGGc-CGUGCGGCCGGgUGC--CGCUU- -5'
26635 3' -65.8 NC_005808.1 + 4876 0.67 0.154426
Target:  5'- gUCGCCGGCcagcaaucccgcaGCGCCaGCCgGCGuGCu-- -3'
miRNA:   3'- -AGCGGCCG-------------UGCGGcCGGgUGC-CGcuu -5'
26635 3' -65.8 NC_005808.1 + 5203 0.68 0.139311
Target:  5'- aUUGCCGGCua-CCGuGCCCACGuCGAGg -3'
miRNA:   3'- -AGCGGCCGugcGGC-CGGGUGCcGCUU- -5'
26635 3' -65.8 NC_005808.1 + 6244 0.66 0.190637
Target:  5'- -gGCCuGCACGCCGGUa-ACGGUGc- -3'
miRNA:   3'- agCGGcCGUGCGGCCGggUGCCGCuu -5'
26635 3' -65.8 NC_005808.1 + 6377 0.66 0.186271
Target:  5'- aCGUCGGCAaucaggcgcaggccgGCCGGCCCgguguagucGCGGCc-- -3'
miRNA:   3'- aGCGGCCGUg--------------CGGCCGGG---------UGCCGcuu -5'
26635 3' -65.8 NC_005808.1 + 7153 0.69 0.106564
Target:  5'- gCGUgGGCGCGCCGuggguaGgCCGCGGCGu- -3'
miRNA:   3'- aGCGgCCGUGCGGC------CgGGUGCCGCuu -5'
26635 3' -65.8 NC_005808.1 + 7231 0.68 0.13566
Target:  5'- gCGUCaGCGCGUCGGgCCugGGCu-- -3'
miRNA:   3'- aGCGGcCGUGCGGCCgGGugCCGcuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.