miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26635 3' -65.8 NC_005808.1 + 42426 0.67 0.154833
Target:  5'- aCGCCGGCauucuGCGCgCGGCagCUugGGCa-- -3'
miRNA:   3'- aGCGGCCG-----UGCG-GCCG--GGugCCGcuu -5'
26635 3' -65.8 NC_005808.1 + 41609 0.7 0.103719
Target:  5'- gCGCgGGCA-GCgGGCUgACGGUGAAg -3'
miRNA:   3'- aGCGgCCGUgCGgCCGGgUGCCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 41510 0.68 0.145341
Target:  5'- cCGCCGccaacaugaaguacGCGCGCCGGgucgcacaggaaaUCCGCGaGCGAAu -3'
miRNA:   3'- aGCGGC--------------CGUGCGGCC-------------GGGUGC-CGCUU- -5'
26635 3' -65.8 NC_005808.1 + 41324 0.67 0.163168
Target:  5'- gUCGCUGGCcgggaauaccgGCGCUcGCCgGaCGGCGGAa -3'
miRNA:   3'- -AGCGGCCG-----------UGCGGcCGGgU-GCCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 40716 0.67 0.171904
Target:  5'- uUCGCCcacccGGCcaGCGCCGGCC-ACGGgcUGAAc -3'
miRNA:   3'- -AGCGG-----CCG--UGCGGCCGGgUGCC--GCUU- -5'
26635 3' -65.8 NC_005808.1 + 40706 0.7 0.093038
Target:  5'- -gGUCGaGCGCG-CGGCCCugGGgGAAg -3'
miRNA:   3'- agCGGC-CGUGCgGCCGGGugCCgCUU- -5'
26635 3' -65.8 NC_005808.1 + 40635 0.67 0.176427
Target:  5'- gCaCCGGCAUaCCGGCCgccuCGGCGAc -3'
miRNA:   3'- aGcGGCCGUGcGGCCGGgu--GCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 40577 0.68 0.125229
Target:  5'- -gGCCGGUAUGCCGGUgC-UGGUGGc -3'
miRNA:   3'- agCGGCCGUGCGGCCGgGuGCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 38613 0.66 0.190637
Target:  5'- gCGagCGGCAgGCCagcGGCCCAgGGgGGAu -3'
miRNA:   3'- aGCg-GCCGUgCGG---CCGGGUgCCgCUU- -5'
26635 3' -65.8 NC_005808.1 + 38271 0.68 0.132097
Target:  5'- gCGCCGuCGCGCCgGGCCUugaGCGuGCGGc -3'
miRNA:   3'- aGCGGCcGUGCGG-CCGGG---UGC-CGCUu -5'
26635 3' -65.8 NC_005808.1 + 38168 0.71 0.085721
Target:  5'- cCGCCGGaUGCGCgCGGCgCCACaGGCGc- -3'
miRNA:   3'- aGCGGCC-GUGCG-GCCG-GGUG-CCGCuu -5'
26635 3' -65.8 NC_005808.1 + 38095 0.67 0.171904
Target:  5'- gUCGCCgaGGCGCuGCuCGGUgCGCcaGGCGAGg -3'
miRNA:   3'- -AGCGG--CCGUG-CG-GCCGgGUG--CCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 37083 0.66 0.181056
Target:  5'- -gGCCGGCAUaCUccacgaauuuGGCCCAcuCGGCGGGg -3'
miRNA:   3'- agCGGCCGUGcGG----------CCGGGU--GCCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 36275 0.67 0.154833
Target:  5'- -gGUCGGC-CGCCGcggcGCCCuCGGUGAu -3'
miRNA:   3'- agCGGCCGuGCGGC----CGGGuGCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 35413 0.68 0.131045
Target:  5'- gCGCgGGCcgauguCGCCGGCCUugugcagcuucucgGCGGUGGu -3'
miRNA:   3'- aGCGgCCGu-----GCGGCCGGG--------------UGCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 35289 0.67 0.158951
Target:  5'- uUCGuCCaGCG-GCgGGCaCCGCGGCGAc -3'
miRNA:   3'- -AGC-GGcCGUgCGgCCG-GGUGCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 34930 0.68 0.143052
Target:  5'- aCGCuCGGCG-GCCGGCUUGCuguuGGCGAc -3'
miRNA:   3'- aGCG-GCCGUgCGGCCGGGUG----CCGCUu -5'
26635 3' -65.8 NC_005808.1 + 34439 0.66 0.205841
Target:  5'- uUCGU--GCGCgGCCGuGCCCucguCGGCGAAg -3'
miRNA:   3'- -AGCGgcCGUG-CGGC-CGGGu---GCCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 33658 0.66 0.195091
Target:  5'- cCGCUGGCGaauCCGGCacggccaCCGCuGGCGAAu -3'
miRNA:   3'- aGCGGCCGUgc-GGCCG-------GGUG-CCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 33616 0.68 0.13566
Target:  5'- cCGCUGGCG-GCaCGGCCacCGCuGGCGAAu -3'
miRNA:   3'- aGCGGCCGUgCG-GCCGG--GUG-CCGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.