Results 1 - 20 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26635 | 3' | -65.8 | NC_005808.1 | + | 10927 | 0.68 | 0.125229 |
Target: 5'- cCGCCGGUuuGCagGGCCUcgggcaguugcGCGGCGAc -3' miRNA: 3'- aGCGGCCGugCGg-CCGGG-----------UGCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 24140 | 0.69 | 0.106564 |
Target: 5'- -aGCCGGCugcGCGCCuGGCCCagcgccucgACGGCu-- -3' miRNA: 3'- agCGGCCG---UGCGG-CCGGG---------UGCCGcuu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 1294 | 0.69 | 0.109482 |
Target: 5'- cCGCCcaCAcCGCCGcGCCCAgGGCGAc -3' miRNA: 3'- aGCGGccGU-GCGGC-CGGGUgCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 28553 | 0.69 | 0.118693 |
Target: 5'- cUUG-CGGC-CGCCGGCCauCGCGGCGc- -3' miRNA: 3'- -AGCgGCCGuGCGGCCGG--GUGCCGCuu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 7528 | 0.69 | 0.12192 |
Target: 5'- gCGuCCGaguguucuuccGCACGCUGGCUCGCGGcCGGGu -3' miRNA: 3'- aGC-GGC-----------CGUGCGGCCGGGUGCC-GCUU- -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 21382 | 0.69 | 0.12192 |
Target: 5'- gUCGCaauGGCGCGCUgGGCCUGC-GCGAGc -3' miRNA: 3'- -AGCGg--CCGUGCGG-CCGGGUGcCGCUU- -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 23568 | 0.69 | 0.12192 |
Target: 5'- aUCGCCGGCAggUGCgGGCggGgGGCGAc -3' miRNA: 3'- -AGCGGCCGU--GCGgCCGggUgCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 20226 | 0.68 | 0.125229 |
Target: 5'- -gGCCGGC-UGuuGGCCUugGGUGc- -3' miRNA: 3'- agCGGCCGuGCggCCGGGugCCGCuu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 40577 | 0.68 | 0.125229 |
Target: 5'- -gGCCGGUAUGCCGGUgC-UGGUGGc -3' miRNA: 3'- agCGGCCGUGCGGCCGgGuGCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 41609 | 0.7 | 0.103719 |
Target: 5'- gCGCgGGCA-GCgGGCUgACGGUGAAg -3' miRNA: 3'- aGCGgCCGUgCGgCCGGgUGCCGCUU- -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 12550 | 0.7 | 0.103438 |
Target: 5'- gCGUCGGUGaauuucuUGCCGGCCUcgcgcugcGCGGCGAu -3' miRNA: 3'- aGCGGCCGU-------GCGGCCGGG--------UGCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 24433 | 0.7 | 0.093038 |
Target: 5'- uUUGUCGGUgccGCGCgCGGCCU-CGGCGAc -3' miRNA: 3'- -AGCGGCCG---UGCG-GCCGGGuGCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 13544 | 0.73 | 0.059904 |
Target: 5'- cUGUCGGC-CGCCugacucgguGCCCACGGCGAu -3' miRNA: 3'- aGCGGCCGuGCGGc--------CGGGUGCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 4273 | 0.72 | 0.063144 |
Target: 5'- gCGCCGGCAUggugaugGCCGuGUCgGCGGUGAAc -3' miRNA: 3'- aGCGGCCGUG-------CGGC-CGGgUGCCGCUU- -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 26268 | 0.72 | 0.070723 |
Target: 5'- cCGCCGGcCugGUCGGCUCGCGcaucgcgcGCGAu -3' miRNA: 3'- aGCGGCC-GugCGGCCGGGUGC--------CGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 4791 | 0.71 | 0.07473 |
Target: 5'- gCGCCcaGCACGCCGGCUgGCGcuGCGGGa -3' miRNA: 3'- aGCGGc-CGUGCGGCCGGgUGC--CGCUU- -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 14420 | 0.71 | 0.07473 |
Target: 5'- gUCGCCaGGCGCGCCugcGGCaccgugUugGGCGAAa -3' miRNA: 3'- -AGCGG-CCGUGCGG---CCGg-----GugCCGCUU- -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 9329 | 0.71 | 0.078954 |
Target: 5'- aCGUCGGCGCGgCGGgCgGCGGCa-- -3' miRNA: 3'- aGCGGCCGUGCgGCCgGgUGCCGcuu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 11277 | 0.71 | 0.085721 |
Target: 5'- gCGCUGGgACGCuCGGCCagguaGGCGGAa -3' miRNA: 3'- aGCGGCCgUGCG-GCCGGgug--CCGCUU- -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 18562 | 0.7 | 0.090536 |
Target: 5'- aCGUCGGUggAgGCCGcGCUCGCGGUGAc -3' miRNA: 3'- aGCGGCCG--UgCGGC-CGGGUGCCGCUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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