miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26635 3' -65.8 NC_005808.1 + 1773 1.05 0.000135
Target:  5'- cUCGCCGGCACGCCGGCCCACGGCGAAu -3'
miRNA:   3'- -AGCGGCCGUGCGGCCGGGUGCCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 4759 0.7 0.100945
Target:  5'- cUUGCCGGCcauucuCGCCGGCUaucCGGCGc- -3'
miRNA:   3'- -AGCGGCCGu-----GCGGCCGGgu-GCCGCuu -5'
26635 3' -65.8 NC_005808.1 + 24765 0.69 0.112173
Target:  5'- cCGaCUGGCACcgauggacaGCCugggcguggacguGGCCCGCGGCGGg -3'
miRNA:   3'- aGC-GGCCGUG---------CGG-------------CCGGGUGCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 28639 0.66 0.205841
Target:  5'- cUGCCGGUggccgacgugcGCGCCgcgauGGCCgGCGGCc-- -3'
miRNA:   3'- aGCGGCCG-----------UGCGG-----CCGGgUGCCGcuu -5'
26635 3' -65.8 NC_005808.1 + 27757 0.74 0.050554
Target:  5'- cUGCCGGCGCG-CGGCcuguauuccaagaCCACGGUGGAg -3'
miRNA:   3'- aGCGGCCGUGCgGCCG-------------GGUGCCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 13374 0.73 0.053601
Target:  5'- aCGCCGccuacaACGCCGGCCC-CGGCGc- -3'
miRNA:   3'- aGCGGCcg----UGCGGCCGGGuGCCGCuu -5'
26635 3' -65.8 NC_005808.1 + 9240 0.72 0.065097
Target:  5'- gUCGaCGGCGCcaaguugucgcuGCCGGCCCucaaggaaauguACGGCGAGg -3'
miRNA:   3'- -AGCgGCCGUG------------CGGCCGGG------------UGCCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 22897 0.71 0.083406
Target:  5'- cUGUCGGC-UGUCGGCagCGCGGCGAAg -3'
miRNA:   3'- aGCGGCCGuGCGGCCGg-GUGCCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 1132 0.7 0.088097
Target:  5'- cCGCgCGcGUuacuggACGCCGGUUCGCGGCGAc -3'
miRNA:   3'- aGCG-GC-CG------UGCGGCCGGGUGCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 16129 0.7 0.100945
Target:  5'- gCGCCGcGCGCGgCGGCCaCGUGcGCGAAc -3'
miRNA:   3'- aGCGGC-CGUGCgGCCGG-GUGC-CGCUU- -5'
26635 3' -65.8 NC_005808.1 + 12679 0.7 0.093038
Target:  5'- aUGCCGaGCGCGUCGGCgCCAUGcGCa-- -3'
miRNA:   3'- aGCGGC-CGUGCGGCCG-GGUGC-CGcuu -5'
26635 3' -65.8 NC_005808.1 + 38168 0.71 0.085721
Target:  5'- cCGCCGGaUGCGCgCGGCgCCACaGGCGc- -3'
miRNA:   3'- aGCGGCC-GUGCG-GCCG-GGUG-CCGCuu -5'
26635 3' -65.8 NC_005808.1 + 32389 0.79 0.016894
Target:  5'- gUUGUCGGgACGCCGGCCUugaugGCGGCGAu -3'
miRNA:   3'- -AGCGGCCgUGCGGCCGGG-----UGCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 14905 0.7 0.098242
Target:  5'- gCGCUGGC-CGCCaacGGCaucgaCCugGGCGAAg -3'
miRNA:   3'- aGCGGCCGuGCGG---CCG-----GGugCCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 691 0.78 0.021194
Target:  5'- aCGCCGG-ACGCCGuGUCCACGGCGc- -3'
miRNA:   3'- aGCGGCCgUGCGGC-CGGGUGCCGCuu -5'
26635 3' -65.8 NC_005808.1 + 17378 0.71 0.085721
Target:  5'- -aGCCGGCccauAUGCCGgaauggaugcgcGCCCGCGGCGc- -3'
miRNA:   3'- agCGGCCG----UGCGGC------------CGGGUGCCGCuu -5'
26635 3' -65.8 NC_005808.1 + 27518 0.7 0.100945
Target:  5'- gCGCUGGCauaccaGCGCCagGGCCUGCGGCc-- -3'
miRNA:   3'- aGCGGCCG------UGCGG--CCGGGUGCCGcuu -5'
26635 3' -65.8 NC_005808.1 + 7153 0.69 0.106564
Target:  5'- gCGUgGGCGCGCCGuggguaGgCCGCGGCGu- -3'
miRNA:   3'- aGCGgCCGUGCGGC------CgGGUGCCGCuu -5'
26635 3' -65.8 NC_005808.1 + 15463 0.77 0.025835
Target:  5'- gUCGuCCGGCAucuuCGCCGGCCCGCacGCGGAc -3'
miRNA:   3'- -AGC-GGCCGU----GCGGCCGGGUGc-CGCUU- -5'
26635 3' -65.8 NC_005808.1 + 11671 0.73 0.054201
Target:  5'- cCGCUGGCACugcuGCCcggcggccagccggcGGCCCugGGCGGc -3'
miRNA:   3'- aGCGGCCGUG----CGG---------------CCGGGugCCGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.