Results 41 - 60 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26635 | 3' | -65.8 | NC_005808.1 | + | 10927 | 0.68 | 0.125229 |
Target: 5'- cCGCCGGUuuGCagGGCCUcgggcaguugcGCGGCGAc -3' miRNA: 3'- aGCGGCCGugCGg-CCGGG-----------UGCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 20226 | 0.68 | 0.125229 |
Target: 5'- -gGCCGGC-UGuuGGCCUugGGUGc- -3' miRNA: 3'- agCGGCCGuGCggCCGGGugCCGCuu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 7652 | 0.68 | 0.127594 |
Target: 5'- aCGCCGGCuccuugccguacacGCGCCGuuCUuugGCGGCGAu -3' miRNA: 3'- aGCGGCCG--------------UGCGGCcgGG---UGCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 35413 | 0.68 | 0.131045 |
Target: 5'- gCGCgGGCcgauguCGCCGGCCUugugcagcuucucgGCGGUGGu -3' miRNA: 3'- aGCGgCCGu-----GCGGCCGGG--------------UGCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 38271 | 0.68 | 0.132097 |
Target: 5'- gCGCCGuCGCGCCgGGCCUugaGCGuGCGGc -3' miRNA: 3'- aGCGGCcGUGCGG-CCGGG---UGC-CGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 185 | 0.68 | 0.132097 |
Target: 5'- gUCGCUgGGCACcgucacgcuGCCGGgCgaCACGGCGAAc -3' miRNA: 3'- -AGCGG-CCGUG---------CGGCCgG--GUGCCGCUU- -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 22265 | 0.68 | 0.1353 |
Target: 5'- uUCGCCGGC-CGUCaGCgaauggugauagaCCACGGCGu- -3' miRNA: 3'- -AGCGGCCGuGCGGcCG-------------GGUGCCGCuu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 23421 | 0.68 | 0.1353 |
Target: 5'- gCGCCGGUcagugcgACGCCGGCCgGgauGCGGAu -3' miRNA: 3'- aGCGGCCG-------UGCGGCCGGgUgc-CGCUU- -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 33616 | 0.68 | 0.13566 |
Target: 5'- cCGCUGGCG-GCaCGGCCacCGCuGGCGAAu -3' miRNA: 3'- aGCGGCCGUgCG-GCCGG--GUG-CCGCUU- -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 18397 | 0.68 | 0.13566 |
Target: 5'- gCGCCGGU--GgCGGCCaCGuCGGCGAAg -3' miRNA: 3'- aGCGGCCGugCgGCCGG-GU-GCCGCUU- -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 11005 | 0.68 | 0.13566 |
Target: 5'- gUCGCCGcGCAacUGCCcgaGGCCCugcaaacCGGCGGg -3' miRNA: 3'- -AGCGGC-CGU--GCGG---CCGGGu------GCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 7231 | 0.68 | 0.13566 |
Target: 5'- gCGUCaGCGCGUCGGgCCugGGCu-- -3' miRNA: 3'- aGCGGcCGUGCGGCCgGGugCCGcuu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 5203 | 0.68 | 0.139311 |
Target: 5'- aUUGCCGGCua-CCGuGCCCACGuCGAGg -3' miRNA: 3'- -AGCGGCCGugcGGC-CGGGUGCcGCUU- -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 18279 | 0.68 | 0.139311 |
Target: 5'- cUUGCCGGCcgucaGCgGGCCgGUGGCGAc -3' miRNA: 3'- -AGCGGCCGug---CGgCCGGgUGCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 31107 | 0.68 | 0.139311 |
Target: 5'- uUCGC--GCACGuuGGCCCGC-GCGAu -3' miRNA: 3'- -AGCGgcCGUGCggCCGGGUGcCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 21274 | 0.68 | 0.143052 |
Target: 5'- aUGUCGGCGuaagUGUCGGCCCAgCGGuCGGc -3' miRNA: 3'- aGCGGCCGU----GCGGCCGGGU-GCC-GCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 34930 | 0.68 | 0.143052 |
Target: 5'- aCGCuCGGCG-GCCGGCUUGCuguuGGCGAc -3' miRNA: 3'- aGCG-GCCGUgCGGCCGGGUG----CCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 3949 | 0.68 | 0.143052 |
Target: 5'- uUCGgCGGCGacggcaGCgCGGCCUACaGCGAc -3' miRNA: 3'- -AGCgGCCGUg-----CG-GCCGGGUGcCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 8908 | 0.68 | 0.143052 |
Target: 5'- -gGCCaaCGCGCUGGCCCGCGuuGCGGc -3' miRNA: 3'- agCGGccGUGCGGCCGGGUGC--CGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 41510 | 0.68 | 0.145341 |
Target: 5'- cCGCCGccaacaugaaguacGCGCGCCGGgucgcacaggaaaUCCGCGaGCGAAu -3' miRNA: 3'- aGCGGC--------------CGUGCGGCC-------------GGGUGC-CGCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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