miRNA display CGI


Results 41 - 60 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26635 3' -65.8 NC_005808.1 + 12679 0.7 0.093038
Target:  5'- aUGCCGaGCGCGUCGGCgCCAUGcGCa-- -3'
miRNA:   3'- aGCGGC-CGUGCGGCCG-GGUGC-CGcuu -5'
26635 3' -65.8 NC_005808.1 + 13078 0.67 0.171904
Target:  5'- gUCGCCacuGCGCuGCgCGGCCUguacgagaACGGCGGg -3'
miRNA:   3'- -AGCGGc--CGUG-CG-GCCGGG--------UGCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 13374 0.73 0.053601
Target:  5'- aCGCCGccuacaACGCCGGCCC-CGGCGc- -3'
miRNA:   3'- aGCGGCcg----UGCGGCCGGGuGCCGCuu -5'
26635 3' -65.8 NC_005808.1 + 13544 0.73 0.059904
Target:  5'- cUGUCGGC-CGCCugacucgguGCCCACGGCGAu -3'
miRNA:   3'- aGCGGCCGuGCGGc--------CGGGUGCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 14341 0.66 0.205841
Target:  5'- cUGCCgGGCcUGCUGGUUCGCGGUGu- -3'
miRNA:   3'- aGCGG-CCGuGCGGCCGGGUGCCGCuu -5'
26635 3' -65.8 NC_005808.1 + 14420 0.71 0.07473
Target:  5'- gUCGCCaGGCGCGCCugcGGCaccgugUugGGCGAAa -3'
miRNA:   3'- -AGCGG-CCGUGCGG---CCGg-----GugCCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 14905 0.7 0.098242
Target:  5'- gCGCUGGC-CGCCaacGGCaucgaCCugGGCGAAg -3'
miRNA:   3'- aGCGGCCGuGCGG---CCG-----GGugCCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 15463 0.77 0.025835
Target:  5'- gUCGuCCGGCAucuuCGCCGGCCCGCacGCGGAc -3'
miRNA:   3'- -AGC-GGCCGU----GCGGCCGGGUGc-CGCUU- -5'
26635 3' -65.8 NC_005808.1 + 16129 0.7 0.100945
Target:  5'- gCGCCGcGCGCGgCGGCCaCGUGcGCGAAc -3'
miRNA:   3'- aGCGGC-CGUGCgGCCGG-GUGC-CGCUU- -5'
26635 3' -65.8 NC_005808.1 + 16802 0.66 0.181056
Target:  5'- gUUGCCaGUugGUCGcGCCCA-GGCGGc -3'
miRNA:   3'- -AGCGGcCGugCGGC-CGGGUgCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 17378 0.71 0.085721
Target:  5'- -aGCCGGCccauAUGCCGgaauggaugcgcGCCCGCGGCGc- -3'
miRNA:   3'- agCGGCCG----UGCGGC------------CGGGUGCCGCuu -5'
26635 3' -65.8 NC_005808.1 + 18143 0.67 0.178266
Target:  5'- gCGCCGGCuuCGgCGGCCCAgcacgcaccccgcgcCGGUa-- -3'
miRNA:   3'- aGCGGCCGu-GCgGCCGGGU---------------GCCGcuu -5'
26635 3' -65.8 NC_005808.1 + 18279 0.68 0.139311
Target:  5'- cUUGCCGGCcgucaGCgGGCCgGUGGCGAc -3'
miRNA:   3'- -AGCGGCCGug---CGgCCGGgUGCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 18397 0.68 0.13566
Target:  5'- gCGCCGGU--GgCGGCCaCGuCGGCGAAg -3'
miRNA:   3'- aGCGGCCGugCgGCCGG-GU-GCCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 18469 0.67 0.154833
Target:  5'- gCGCCGGCgGCGUCGGCcgauucguCCACcGUGAu -3'
miRNA:   3'- aGCGGCCG-UGCGGCCG--------GGUGcCGCUu -5'
26635 3' -65.8 NC_005808.1 + 18562 0.7 0.090536
Target:  5'- aCGUCGGUggAgGCCGcGCUCGCGGUGAc -3'
miRNA:   3'- aGCGGCCG--UgCGGC-CGGGUGCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 20226 0.68 0.125229
Target:  5'- -gGCCGGC-UGuuGGCCUugGGUGc- -3'
miRNA:   3'- agCGGCCGuGCggCCGGGugCCGCuu -5'
26635 3' -65.8 NC_005808.1 + 20955 0.66 0.185313
Target:  5'- gUUGCCGGCA-GUCGGUuccguggucgaaaUCACGGCGc- -3'
miRNA:   3'- -AGCGGCCGUgCGGCCG-------------GGUGCCGCuu -5'
26635 3' -65.8 NC_005808.1 + 21274 0.68 0.143052
Target:  5'- aUGUCGGCGuaagUGUCGGCCCAgCGGuCGGc -3'
miRNA:   3'- aGCGGCCGU----GCGGCCGGGU-GCC-GCUu -5'
26635 3' -65.8 NC_005808.1 + 21382 0.69 0.12192
Target:  5'- gUCGCaauGGCGCGCUgGGCCUGC-GCGAGc -3'
miRNA:   3'- -AGCGg--CCGUGCGG-CCGGGUGcCGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.