miRNA display CGI


Results 41 - 59 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26635 5' -58.6 NC_005808.1 + 36179 0.67 0.368419
Target:  5'- cGCC-GCGCaGGCccGCAuUCACGCGCu-- -3'
miRNA:   3'- -UGGaCGCG-CCGu-CGU-AGUGCGCGuuu -5'
26635 5' -58.6 NC_005808.1 + 27487 0.67 0.368419
Target:  5'- cGCCggGCGCGGUGcGCcagGCGCGCGAc -3'
miRNA:   3'- -UGGa-CGCGCCGU-CGuagUGCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 26366 0.66 0.377356
Target:  5'- uGCCUGUccGUugauGGCAucCAUCGCGCGCGAu -3'
miRNA:   3'- -UGGACG--CG----CCGUc-GUAGUGCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 32402 0.66 0.395663
Target:  5'- gACCUGgGCGGCGGuUGUCGgGaCGCc-- -3'
miRNA:   3'- -UGGACgCGCCGUC-GUAGUgC-GCGuuu -5'
26635 5' -58.6 NC_005808.1 + 27530 0.66 0.424173
Target:  5'- uGCgUGCGCGGCgcgcuGGCAUaccaGCGC-CAGGg -3'
miRNA:   3'- -UGgACGCGCCG-----UCGUAg---UGCGcGUUU- -5'
26635 5' -58.6 NC_005808.1 + 15658 0.67 0.325949
Target:  5'- gGCCgaugGCGCGGU-GCAUCcGCaGCGCGu- -3'
miRNA:   3'- -UGGa---CGCGCCGuCGUAG-UG-CGCGUuu -5'
26635 5' -58.6 NC_005808.1 + 27862 0.68 0.302264
Target:  5'- gACgUGCuGCGGCuGCGcggCGCGCGCu-- -3'
miRNA:   3'- -UGgACG-CGCCGuCGUa--GUGCGCGuuu -5'
26635 5' -58.6 NC_005808.1 + 27641 0.68 0.294669
Target:  5'- cGCCUGCuGCcGguGCccuUUACGCGCAAc -3'
miRNA:   3'- -UGGACG-CGcCguCGu--AGUGCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 8258 0.74 0.109439
Target:  5'- gGCCgUGCGCgaugaaaucgccGGCAGCAUCcgggcgcACGCGCAGGg -3'
miRNA:   3'- -UGG-ACGCG------------CCGUCGUAG-------UGCGCGUUU- -5'
26635 5' -58.6 NC_005808.1 + 16128 0.73 0.137944
Target:  5'- cGCCgcGCGCGGCGGC--CACGUGCGc- -3'
miRNA:   3'- -UGGa-CGCGCCGUCGuaGUGCGCGUuu -5'
26635 5' -58.6 NC_005808.1 + 7311 0.71 0.19119
Target:  5'- gACCUGgGCGGCcGaCAUCGCcgagggugagcgcgGCGCAGAu -3'
miRNA:   3'- -UGGACgCGCCGuC-GUAGUG--------------CGCGUUU- -5'
26635 5' -58.6 NC_005808.1 + 12678 0.71 0.192768
Target:  5'- uGCCgaGCGCGuCGGCGcCAUGCGCAAAu -3'
miRNA:   3'- -UGGa-CGCGCcGUCGUaGUGCGCGUUU- -5'
26635 5' -58.6 NC_005808.1 + 27904 0.7 0.203031
Target:  5'- aGCagcgGCGCGGCcggcgccaccgcgGGCAgCGCGCGCGAGg -3'
miRNA:   3'- -UGga--CGCGCCG-------------UCGUaGUGCGCGUUU- -5'
26635 5' -58.6 NC_005808.1 + 22487 0.7 0.214921
Target:  5'- cGCCgucaagGCGUGGCuGGCGaacgUCACGCGCu-- -3'
miRNA:   3'- -UGGa-----CGCGCCG-UCGU----AGUGCGCGuuu -5'
26635 5' -58.6 NC_005808.1 + 34105 0.7 0.226796
Target:  5'- cGCCgaugGCG-GGCAGCGaCAgGCGCGAc -3'
miRNA:   3'- -UGGa---CGCgCCGUCGUaGUgCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 1883 0.69 0.272778
Target:  5'- cGCCU-CGUGGUcGgGUCAUGCGCAAu -3'
miRNA:   3'- -UGGAcGCGCCGuCgUAGUGCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 37131 0.68 0.287223
Target:  5'- uCCagGC-CGGCAGCuucuggucaAUCACGCGCAu- -3'
miRNA:   3'- uGGa-CGcGCCGUCG---------UAGUGCGCGUuu -5'
26635 5' -58.6 NC_005808.1 + 30431 0.68 0.287223
Target:  5'- cCCUacaGCaGCGGCGGguUCuCGCGCGAc -3'
miRNA:   3'- uGGA---CG-CGCCGUCguAGuGCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 1738 1.05 0.000491
Target:  5'- uACCUGCGCGGCAGCAUCACGCGCAAAc -3'
miRNA:   3'- -UGGACGCGCCGUCGUAGUGCGCGUUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.