Results 41 - 59 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26635 | 5' | -58.6 | NC_005808.1 | + | 36179 | 0.67 | 0.368419 |
Target: 5'- cGCC-GCGCaGGCccGCAuUCACGCGCu-- -3' miRNA: 3'- -UGGaCGCG-CCGu-CGU-AGUGCGCGuuu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 27487 | 0.67 | 0.368419 |
Target: 5'- cGCCggGCGCGGUGcGCcagGCGCGCGAc -3' miRNA: 3'- -UGGa-CGCGCCGU-CGuagUGCGCGUUu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 26366 | 0.66 | 0.377356 |
Target: 5'- uGCCUGUccGUugauGGCAucCAUCGCGCGCGAu -3' miRNA: 3'- -UGGACG--CG----CCGUc-GUAGUGCGCGUUu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 32402 | 0.66 | 0.395663 |
Target: 5'- gACCUGgGCGGCGGuUGUCGgGaCGCc-- -3' miRNA: 3'- -UGGACgCGCCGUC-GUAGUgC-GCGuuu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 27530 | 0.66 | 0.424173 |
Target: 5'- uGCgUGCGCGGCgcgcuGGCAUaccaGCGC-CAGGg -3' miRNA: 3'- -UGgACGCGCCG-----UCGUAg---UGCGcGUUU- -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 15658 | 0.67 | 0.325949 |
Target: 5'- gGCCgaugGCGCGGU-GCAUCcGCaGCGCGu- -3' miRNA: 3'- -UGGa---CGCGCCGuCGUAG-UG-CGCGUuu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 27862 | 0.68 | 0.302264 |
Target: 5'- gACgUGCuGCGGCuGCGcggCGCGCGCu-- -3' miRNA: 3'- -UGgACG-CGCCGuCGUa--GUGCGCGuuu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 27641 | 0.68 | 0.294669 |
Target: 5'- cGCCUGCuGCcGguGCccuUUACGCGCAAc -3' miRNA: 3'- -UGGACG-CGcCguCGu--AGUGCGCGUUu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 8258 | 0.74 | 0.109439 |
Target: 5'- gGCCgUGCGCgaugaaaucgccGGCAGCAUCcgggcgcACGCGCAGGg -3' miRNA: 3'- -UGG-ACGCG------------CCGUCGUAG-------UGCGCGUUU- -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 16128 | 0.73 | 0.137944 |
Target: 5'- cGCCgcGCGCGGCGGC--CACGUGCGc- -3' miRNA: 3'- -UGGa-CGCGCCGUCGuaGUGCGCGUuu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 7311 | 0.71 | 0.19119 |
Target: 5'- gACCUGgGCGGCcGaCAUCGCcgagggugagcgcgGCGCAGAu -3' miRNA: 3'- -UGGACgCGCCGuC-GUAGUG--------------CGCGUUU- -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 12678 | 0.71 | 0.192768 |
Target: 5'- uGCCgaGCGCGuCGGCGcCAUGCGCAAAu -3' miRNA: 3'- -UGGa-CGCGCcGUCGUaGUGCGCGUUU- -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 27904 | 0.7 | 0.203031 |
Target: 5'- aGCagcgGCGCGGCcggcgccaccgcgGGCAgCGCGCGCGAGg -3' miRNA: 3'- -UGga--CGCGCCG-------------UCGUaGUGCGCGUUU- -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 22487 | 0.7 | 0.214921 |
Target: 5'- cGCCgucaagGCGUGGCuGGCGaacgUCACGCGCu-- -3' miRNA: 3'- -UGGa-----CGCGCCG-UCGU----AGUGCGCGuuu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 34105 | 0.7 | 0.226796 |
Target: 5'- cGCCgaugGCG-GGCAGCGaCAgGCGCGAc -3' miRNA: 3'- -UGGa---CGCgCCGUCGUaGUgCGCGUUu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 1883 | 0.69 | 0.272778 |
Target: 5'- cGCCU-CGUGGUcGgGUCAUGCGCAAu -3' miRNA: 3'- -UGGAcGCGCCGuCgUAGUGCGCGUUu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 37131 | 0.68 | 0.287223 |
Target: 5'- uCCagGC-CGGCAGCuucuggucaAUCACGCGCAu- -3' miRNA: 3'- uGGa-CGcGCCGUCG---------UAGUGCGCGUuu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 30431 | 0.68 | 0.287223 |
Target: 5'- cCCUacaGCaGCGGCGGguUCuCGCGCGAc -3' miRNA: 3'- uGGA---CG-CGCCGUCguAGuGCGCGUUu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 1738 | 1.05 | 0.000491 |
Target: 5'- uACCUGCGCGGCAGCAUCACGCGCAAAc -3' miRNA: 3'- -UGGACGCGCCGUCGUAGUGCGCGUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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