Results 21 - 40 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26635 | 5' | -58.6 | NC_005808.1 | + | 4118 | 0.75 | 0.089608 |
Target: 5'- aGCCUGCGCuGCAGCGUUGCuucccgGCGCAu- -3' miRNA: 3'- -UGGACGCGcCGUCGUAGUG------CGCGUuu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 8654 | 0.73 | 0.141903 |
Target: 5'- gGCCUucaucGCGCGGuCGGCAUUGCGUGCc-- -3' miRNA: 3'- -UGGA-----CGCGCC-GUCGUAGUGCGCGuuu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 326 | 0.72 | 0.150135 |
Target: 5'- uACCgucagGCugGCGGUGGCGUCGCGCaGCAGg -3' miRNA: 3'- -UGGa----CG--CGCCGUCGUAGUGCG-CGUUu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 37464 | 0.72 | 0.163298 |
Target: 5'- cGCCUGCGCGGCAcguuGCAguUCAacgGCGCc-- -3' miRNA: 3'- -UGGACGCGCCGU----CGU--AGUg--CGCGuuu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 33908 | 0.71 | 0.18246 |
Target: 5'- aAUCUGCGCGGC-GCAcaccuggGCGCGCAGc -3' miRNA: 3'- -UGGACGCGCCGuCGUag-----UGCGCGUUu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 1036 | 0.7 | 0.209186 |
Target: 5'- gGCCacgGCcgGCGGCAGCAUguCGcCGCGAAc -3' miRNA: 3'- -UGGa--CG--CGCCGUCGUAguGC-GCGUUU- -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 9202 | 0.7 | 0.226796 |
Target: 5'- gGCCUGCuCGGCGGCG-CG-GCGCAc- -3' miRNA: 3'- -UGGACGcGCCGUCGUaGUgCGCGUuu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 27800 | 0.68 | 0.287223 |
Target: 5'- cGCC-GCGCagccGCAGCAcguccUCGCGCGCGc- -3' miRNA: 3'- -UGGaCGCGc---CGUCGU-----AGUGCGCGUuu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 454 | 0.68 | 0.287223 |
Target: 5'- -gCUGCGCGGcCAGCuugCGgGCGCu-- -3' miRNA: 3'- ugGACGCGCC-GUCGua-GUgCGCGuuu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 17368 | 0.68 | 0.279927 |
Target: 5'- cGCCUGCGacaGGUAugccuGCAUCGCGC-CGAc -3' miRNA: 3'- -UGGACGCg--CCGU-----CGUAGUGCGcGUUu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 8120 | 0.68 | 0.279927 |
Target: 5'- cACC-GCGCGGcCGGCGUUgguuguggGCGUGCGGGu -3' miRNA: 3'- -UGGaCGCGCC-GUCGUAG--------UGCGCGUUU- -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 14231 | 0.69 | 0.258922 |
Target: 5'- uCCUugGCGCGGUuaaguGCGUCguccACGCGCAAc -3' miRNA: 3'- uGGA--CGCGCCGu----CGUAG----UGCGCGUUu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 14725 | 0.69 | 0.239222 |
Target: 5'- cCCUGCGCccGGUAGCcccaggcagUACGCGCAGc -3' miRNA: 3'- uGGACGCG--CCGUCGua-------GUGCGCGUUu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 35963 | 0.7 | 0.23294 |
Target: 5'- aACCUGUacguguccGCGcGCAGCGcCACGCGCc-- -3' miRNA: 3'- -UGGACG--------CGC-CGUCGUaGUGCGCGuuu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 27904 | 0.7 | 0.203031 |
Target: 5'- aGCagcgGCGCGGCcggcgccaccgcgGGCAgCGCGCGCGAGg -3' miRNA: 3'- -UGga--CGCGCCG-------------UCGUaGUGCGCGUUU- -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 12678 | 0.71 | 0.192768 |
Target: 5'- uGCCgaGCGCGuCGGCGcCAUGCGCAAAu -3' miRNA: 3'- -UGGa-CGCGCcGUCGUaGUGCGCGUUU- -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 7311 | 0.71 | 0.19119 |
Target: 5'- gACCUGgGCGGCcGaCAUCGCcgagggugagcgcgGCGCAGAu -3' miRNA: 3'- -UGGACgCGCCGuC-GUAGUG--------------CGCGUUU- -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 16128 | 0.73 | 0.137944 |
Target: 5'- cGCCgcGCGCGGCGGC--CACGUGCGc- -3' miRNA: 3'- -UGGa-CGCGCCGUCGuaGUGCGCGUuu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 8258 | 0.74 | 0.109439 |
Target: 5'- gGCCgUGCGCgaugaaaucgccGGCAGCAUCcgggcgcACGCGCAGGg -3' miRNA: 3'- -UGG-ACGCG------------CCGUCGUAG-------UGCGCGUUU- -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 27530 | 0.66 | 0.424173 |
Target: 5'- uGCgUGCGCGGCgcgcuGGCAUaccaGCGC-CAGGg -3' miRNA: 3'- -UGgACGCGCCG-----UCGUAg---UGCGcGUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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