miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26635 5' -58.6 NC_005808.1 + 32402 0.66 0.395663
Target:  5'- gACCUGgGCGGCGGuUGUCGgGaCGCc-- -3'
miRNA:   3'- -UGGACgCGCCGUC-GUAGUgC-GCGuuu -5'
26635 5' -58.6 NC_005808.1 + 5578 0.67 0.367533
Target:  5'- gGCCgGCGUguccuacgacuuuGGCAGCAUCGC-CGUAc- -3'
miRNA:   3'- -UGGaCGCG-------------CCGUCGUAGUGcGCGUuu -5'
26635 5' -58.6 NC_005808.1 + 37131 0.68 0.287223
Target:  5'- uCCagGC-CGGCAGCuucuggucaAUCACGCGCAu- -3'
miRNA:   3'- uGGa-CGcGCCGUCG---------UAGUGCGCGUuu -5'
26635 5' -58.6 NC_005808.1 + 1883 0.69 0.272778
Target:  5'- cGCCU-CGUGGUcGgGUCAUGCGCAAu -3'
miRNA:   3'- -UGGAcGCGCCGuCgUAGUGCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 34105 0.7 0.226796
Target:  5'- cGCCgaugGCG-GGCAGCGaCAgGCGCGAc -3'
miRNA:   3'- -UGGa---CGCgCCGUCGUaGUgCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 33908 0.71 0.18246
Target:  5'- aAUCUGCGCGGC-GCAcaccuggGCGCGCAGc -3'
miRNA:   3'- -UGGACGCGCCGuCGUag-----UGCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 4118 0.75 0.089608
Target:  5'- aGCCUGCGCuGCAGCGUUGCuucccgGCGCAu- -3'
miRNA:   3'- -UGGACGCGcCGUCGUAGUG------CGCGUuu -5'
26635 5' -58.6 NC_005808.1 + 17754 0.66 0.405029
Target:  5'- aACCccagGUGUGcaguucgaGCAGCgaGUCGCGCGCGAAc -3'
miRNA:   3'- -UGGa---CGCGC--------CGUCG--UAGUGCGCGUUU- -5'
26635 5' -58.6 NC_005808.1 + 11492 0.66 0.395663
Target:  5'- cGCCUGCGacaccgcaaagGGCAGCGccugcgCugGCGUGAGg -3'
miRNA:   3'- -UGGACGCg----------CCGUCGUa-----GugCGCGUUU- -5'
26635 5' -58.6 NC_005808.1 + 28620 0.66 0.395663
Target:  5'- aACCggGCGCGGaugaggccggcCAGUucCGCGCGCAGu -3'
miRNA:   3'- -UGGa-CGCGCC-----------GUCGuaGUGCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 454 0.68 0.287223
Target:  5'- -gCUGCGCGGcCAGCuugCGgGCGCu-- -3'
miRNA:   3'- ugGACGCGCC-GUCGua-GUgCGCGuuu -5'
26635 5' -58.6 NC_005808.1 + 17368 0.68 0.279927
Target:  5'- cGCCUGCGacaGGUAugccuGCAUCGCGC-CGAc -3'
miRNA:   3'- -UGGACGCg--CCGU-----CGUAGUGCGcGUUu -5'
26635 5' -58.6 NC_005808.1 + 8120 0.68 0.279927
Target:  5'- cACC-GCGCGGcCGGCGUUgguuguggGCGUGCGGGu -3'
miRNA:   3'- -UGGaCGCGCC-GUCGUAG--------UGCGCGUUU- -5'
26635 5' -58.6 NC_005808.1 + 14231 0.69 0.258922
Target:  5'- uCCUugGCGCGGUuaaguGCGUCguccACGCGCAAc -3'
miRNA:   3'- uGGA--CGCGCCGu----CGUAG----UGCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 37464 0.72 0.163298
Target:  5'- cGCCUGCGCGGCAcguuGCAguUCAacgGCGCc-- -3'
miRNA:   3'- -UGGACGCGCCGU----CGU--AGUg--CGCGuuu -5'
26635 5' -58.6 NC_005808.1 + 3108 0.67 0.359628
Target:  5'- gACCUGaUGCGGCGuCAUaGCGUGCGGu -3'
miRNA:   3'- -UGGAC-GCGCCGUcGUAgUGCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 1102 0.67 0.368419
Target:  5'- gGCCgUGuCGC-GCGGCAUguCGCGCAu- -3'
miRNA:   3'- -UGG-AC-GCGcCGUCGUAguGCGCGUuu -5'
26635 5' -58.6 NC_005808.1 + 22617 0.66 0.376456
Target:  5'- cGCCccgcGCGCGGCAGCAgguagUCGCugauuuccuuccaGUGCGAc -3'
miRNA:   3'- -UGGa---CGCGCCGUCGU-----AGUG-------------CGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 35566 0.66 0.386438
Target:  5'- cGCCUGCuGCaacaGGCGGCAcaaacgcccaUCACGCGa--- -3'
miRNA:   3'- -UGGACG-CG----CCGUCGU----------AGUGCGCguuu -5'
26635 5' -58.6 NC_005808.1 + 34237 0.66 0.38919
Target:  5'- uCgaGCGCGGCggcgcaggagguacuGGCAUgagcacgCACGCGCAAc -3'
miRNA:   3'- uGgaCGCGCCG---------------UCGUA-------GUGCGCGUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.