Results 21 - 40 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26635 | 5' | -58.6 | NC_005808.1 | + | 6342 | 0.67 | 0.359628 |
Target: 5'- gACCUGUuCGGCcuGCccaGCGCGCAGAu -3' miRNA: 3'- -UGGACGcGCCGu-CGuagUGCGCGUUU- -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 40897 | 0.67 | 0.350985 |
Target: 5'- gGCCUGCGCcuGGC-GCGUCGgGC-CGAu -3' miRNA: 3'- -UGGACGCG--CCGuCGUAGUgCGcGUUu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 27530 | 0.66 | 0.424173 |
Target: 5'- uGCgUGCGCGGCgcgcuGGCAUaccaGCGC-CAGGg -3' miRNA: 3'- -UGgACGCGCCG-----UCGUAg---UGCGcGUUU- -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 26366 | 0.66 | 0.377356 |
Target: 5'- uGCCUGUccGUugauGGCAucCAUCGCGCGCGAu -3' miRNA: 3'- -UGGACG--CG----CCGUc-GUAGUGCGCGUUu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 15658 | 0.67 | 0.325949 |
Target: 5'- gGCCgaugGCGCGGU-GCAUCcGCaGCGCGu- -3' miRNA: 3'- -UGGa---CGCGCCGuCGUAG-UG-CGCGUuu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 26273 | 0.76 | 0.087033 |
Target: 5'- gGCCUG-GuCGGCucgcGCAUCGCGCGCGAu -3' miRNA: 3'- -UGGACgC-GCCGu---CGUAGUGCGCGUUu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 326 | 0.72 | 0.150135 |
Target: 5'- uACCgucagGCugGCGGUGGCGUCGCGCaGCAGg -3' miRNA: 3'- -UGGa----CG--CGCCGUCGUAGUGCG-CGUUu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 37464 | 0.72 | 0.163298 |
Target: 5'- cGCCUGCGCGGCAcguuGCAguUCAacgGCGCc-- -3' miRNA: 3'- -UGGACGCGCCGU----CGU--AGUg--CGCGuuu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 14725 | 0.69 | 0.239222 |
Target: 5'- cCCUGCGCccGGUAGCcccaggcagUACGCGCAGc -3' miRNA: 3'- uGGACGCG--CCGUCGua-------GUGCGCGUUu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 14231 | 0.69 | 0.258922 |
Target: 5'- uCCUugGCGCGGUuaaguGCGUCguccACGCGCAAc -3' miRNA: 3'- uGGA--CGCGCCGu----CGUAG----UGCGCGUUu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 17754 | 0.66 | 0.405029 |
Target: 5'- aACCccagGUGUGcaguucgaGCAGCgaGUCGCGCGCGAAc -3' miRNA: 3'- -UGGa---CGCGC--------CGUCG--UAGUGCGCGUUU- -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 11492 | 0.66 | 0.395663 |
Target: 5'- cGCCUGCGacaccgcaaagGGCAGCGccugcgCugGCGUGAGg -3' miRNA: 3'- -UGGACGCg----------CCGUCGUa-----GugCGCGUUU- -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 28620 | 0.66 | 0.395663 |
Target: 5'- aACCggGCGCGGaugaggccggcCAGUucCGCGCGCAGu -3' miRNA: 3'- -UGGa-CGCGCC-----------GUCGuaGUGCGCGUUu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 34237 | 0.66 | 0.38919 |
Target: 5'- uCgaGCGCGGCggcgcaggagguacuGGCAUgagcacgCACGCGCAAc -3' miRNA: 3'- uGgaCGCGCCG---------------UCGUA-------GUGCGCGUUu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 35566 | 0.66 | 0.386438 |
Target: 5'- cGCCUGCuGCaacaGGCGGCAcaaacgcccaUCACGCGa--- -3' miRNA: 3'- -UGGACG-CG----CCGUCGU----------AGUGCGCguuu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 22617 | 0.66 | 0.376456 |
Target: 5'- cGCCccgcGCGCGGCAGCAgguagUCGCugauuuccuuccaGUGCGAc -3' miRNA: 3'- -UGGa---CGCGCCGUCGU-----AGUG-------------CGCGUUu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 1102 | 0.67 | 0.368419 |
Target: 5'- gGCCgUGuCGC-GCGGCAUguCGCGCAu- -3' miRNA: 3'- -UGG-AC-GCGcCGUCGUAguGCGCGUuu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 3108 | 0.67 | 0.359628 |
Target: 5'- gACCUGaUGCGGCGuCAUaGCGUGCGGu -3' miRNA: 3'- -UGGAC-GCGCCGUcGUAgUGCGCGUUu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 8120 | 0.68 | 0.279927 |
Target: 5'- cACC-GCGCGGcCGGCGUUgguuguggGCGUGCGGGu -3' miRNA: 3'- -UGGaCGCGCC-GUCGUAG--------UGCGCGUUU- -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 17368 | 0.68 | 0.279927 |
Target: 5'- cGCCUGCGacaGGUAugccuGCAUCGCGC-CGAc -3' miRNA: 3'- -UGGACGCg--CCGU-----CGUAGUGCGcGUUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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