miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26635 5' -58.6 NC_005808.1 + 1883 0.69 0.272778
Target:  5'- cGCCU-CGUGGUcGgGUCAUGCGCAAu -3'
miRNA:   3'- -UGGAcGCGCCGuCgUAGUGCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 8120 0.68 0.279927
Target:  5'- cACC-GCGCGGcCGGCGUUgguuguggGCGUGCGGGu -3'
miRNA:   3'- -UGGaCGCGCC-GUCGUAG--------UGCGCGUUU- -5'
26635 5' -58.6 NC_005808.1 + 17368 0.68 0.279927
Target:  5'- cGCCUGCGacaGGUAugccuGCAUCGCGC-CGAc -3'
miRNA:   3'- -UGGACGCg--CCGU-----CGUAGUGCGcGUUu -5'
26635 5' -58.6 NC_005808.1 + 37131 0.68 0.287223
Target:  5'- uCCagGC-CGGCAGCuucuggucaAUCACGCGCAu- -3'
miRNA:   3'- uGGa-CGcGCCGUCG---------UAGUGCGCGUuu -5'
26635 5' -58.6 NC_005808.1 + 27800 0.68 0.287223
Target:  5'- cGCC-GCGCagccGCAGCAcguccUCGCGCGCGc- -3'
miRNA:   3'- -UGGaCGCGc---CGUCGU-----AGUGCGCGUuu -5'
26635 5' -58.6 NC_005808.1 + 30431 0.68 0.287223
Target:  5'- cCCUacaGCaGCGGCGGguUCuCGCGCGAc -3'
miRNA:   3'- uGGA---CG-CGCCGUCguAGuGCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 454 0.68 0.287223
Target:  5'- -gCUGCGCGGcCAGCuugCGgGCGCu-- -3'
miRNA:   3'- ugGACGCGCC-GUCGua-GUgCGCGuuu -5'
26635 5' -58.6 NC_005808.1 + 27641 0.68 0.294669
Target:  5'- cGCCUGCuGCcGguGCccuUUACGCGCAAc -3'
miRNA:   3'- -UGGACG-CGcCguCGu--AGUGCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 27862 0.68 0.302264
Target:  5'- gACgUGCuGCGGCuGCGcggCGCGCGCu-- -3'
miRNA:   3'- -UGgACG-CGCCGuCGUa--GUGCGCGuuu -5'
26635 5' -58.6 NC_005808.1 + 2369 0.68 0.302264
Target:  5'- gGCCUGCacGUGGCAGaCGccCGCGUGCGu- -3'
miRNA:   3'- -UGGACG--CGCCGUC-GUa-GUGCGCGUuu -5'
26635 5' -58.6 NC_005808.1 + 26046 0.68 0.310009
Target:  5'- aGCCcGCGCGGCGgGCGcgcucCAUGCGCu-- -3'
miRNA:   3'- -UGGaCGCGCCGU-CGUa----GUGCGCGuuu -5'
26635 5' -58.6 NC_005808.1 + 10864 0.67 0.325138
Target:  5'- cCCUGCGUGGCuucggucGGCGcgaUGCGCGCGGc -3'
miRNA:   3'- uGGACGCGCCG-------UCGUa--GUGCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 1361 0.67 0.325949
Target:  5'- cGCCcuggGCGCGGCGGUGUgGgCGgGCAu- -3'
miRNA:   3'- -UGGa---CGCGCCGUCGUAgU-GCgCGUuu -5'
26635 5' -58.6 NC_005808.1 + 25768 0.67 0.325949
Target:  5'- -gCUGgGCGGCGGCAaCgauggccgcgauGCGCGCGGc -3'
miRNA:   3'- ugGACgCGCCGUCGUaG------------UGCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 15658 0.67 0.325949
Target:  5'- gGCCgaugGCGCGGU-GCAUCcGCaGCGCGu- -3'
miRNA:   3'- -UGGa---CGCGCCGuCGUAG-UG-CGCGUuu -5'
26635 5' -58.6 NC_005808.1 + 2214 0.67 0.34249
Target:  5'- cCCU-CGUcgGGUAGCAcCACGCGCAGc -3'
miRNA:   3'- uGGAcGCG--CCGUCGUaGUGCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 40897 0.67 0.350985
Target:  5'- gGCCUGCGCcuGGC-GCGUCGgGC-CGAu -3'
miRNA:   3'- -UGGACGCG--CCGuCGUAGUgCGcGUUu -5'
26635 5' -58.6 NC_005808.1 + 36160 0.67 0.350985
Target:  5'- cGCCUucgcGgGCGGUGGUGUCGCGaGCGAGg -3'
miRNA:   3'- -UGGA----CgCGCCGUCGUAGUGCgCGUUU- -5'
26635 5' -58.6 NC_005808.1 + 3108 0.67 0.359628
Target:  5'- gACCUGaUGCGGCGuCAUaGCGUGCGGu -3'
miRNA:   3'- -UGGAC-GCGCCGUcGUAgUGCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 6809 0.67 0.359628
Target:  5'- gACCUuuccgcuauugaGCGCGGCGGCccaGCGCaGCGGc -3'
miRNA:   3'- -UGGA------------CGCGCCGUCGuagUGCG-CGUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.