Results 21 - 40 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26635 | 5' | -58.6 | NC_005808.1 | + | 10864 | 0.67 | 0.325138 |
Target: 5'- cCCUGCGUGGCuucggucGGCGcgaUGCGCGCGGc -3' miRNA: 3'- uGGACGCGCCG-------UCGUa--GUGCGCGUUu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 11492 | 0.66 | 0.395663 |
Target: 5'- cGCCUGCGacaccgcaaagGGCAGCGccugcgCugGCGUGAGg -3' miRNA: 3'- -UGGACGCg----------CCGUCGUa-----GugCGCGUUU- -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 12211 | 0.67 | 0.363127 |
Target: 5'- cGCCUacgcggaagcgcagcGCGUGGC-GCGUCGCGC-CAAc -3' miRNA: 3'- -UGGA---------------CGCGCCGuCGUAGUGCGcGUUu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 12678 | 0.71 | 0.192768 |
Target: 5'- uGCCgaGCGCGuCGGCGcCAUGCGCAAAu -3' miRNA: 3'- -UGGa-CGCGCcGUCGUaGUGCGCGUUU- -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 13448 | 0.66 | 0.414533 |
Target: 5'- cGCCaGCuuGGCGGCcUCGgGCGCGGu -3' miRNA: 3'- -UGGaCGcgCCGUCGuAGUgCGCGUUu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 14231 | 0.69 | 0.258922 |
Target: 5'- uCCUugGCGCGGUuaaguGCGUCguccACGCGCAAc -3' miRNA: 3'- uGGA--CGCGCCGu----CGUAG----UGCGCGUUu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 14725 | 0.69 | 0.239222 |
Target: 5'- cCCUGCGCccGGUAGCcccaggcagUACGCGCAGc -3' miRNA: 3'- uGGACGCG--CCGUCGua-------GUGCGCGUUu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 15658 | 0.67 | 0.325949 |
Target: 5'- gGCCgaugGCGCGGU-GCAUCcGCaGCGCGu- -3' miRNA: 3'- -UGGa---CGCGCCGuCGUAG-UG-CGCGUuu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 16128 | 0.73 | 0.137944 |
Target: 5'- cGCCgcGCGCGGCGGC--CACGUGCGc- -3' miRNA: 3'- -UGGa-CGCGCCGUCGuaGUGCGCGUuu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 17368 | 0.68 | 0.279927 |
Target: 5'- cGCCUGCGacaGGUAugccuGCAUCGCGC-CGAc -3' miRNA: 3'- -UGGACGCg--CCGU-----CGUAGUGCGcGUUu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 17754 | 0.66 | 0.405029 |
Target: 5'- aACCccagGUGUGcaguucgaGCAGCgaGUCGCGCGCGAAc -3' miRNA: 3'- -UGGa---CGCGC--------CGUCG--UAGUGCGCGUUU- -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 22487 | 0.7 | 0.214921 |
Target: 5'- cGCCgucaagGCGUGGCuGGCGaacgUCACGCGCu-- -3' miRNA: 3'- -UGGa-----CGCGCCG-UCGU----AGUGCGCGuuu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 22617 | 0.66 | 0.376456 |
Target: 5'- cGCCccgcGCGCGGCAGCAgguagUCGCugauuuccuuccaGUGCGAc -3' miRNA: 3'- -UGGa---CGCGCCGUCGU-----AGUG-------------CGCGUUu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 25768 | 0.67 | 0.325949 |
Target: 5'- -gCUGgGCGGCGGCAaCgauggccgcgauGCGCGCGGc -3' miRNA: 3'- ugGACgCGCCGUCGUaG------------UGCGCGUUu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 26046 | 0.68 | 0.310009 |
Target: 5'- aGCCcGCGCGGCGgGCGcgcucCAUGCGCu-- -3' miRNA: 3'- -UGGaCGCGCCGU-CGUa----GUGCGCGuuu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 26117 | 0.66 | 0.418373 |
Target: 5'- cGCCaUGCcggcauguguucgucGCGGCAG-AUUugGCGCAGc -3' miRNA: 3'- -UGG-ACG---------------CGCCGUCgUAGugCGCGUUu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 26273 | 0.76 | 0.087033 |
Target: 5'- gGCCUG-GuCGGCucgcGCAUCGCGCGCGAu -3' miRNA: 3'- -UGGACgC-GCCGu---CGUAGUGCGCGUUu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 26366 | 0.66 | 0.377356 |
Target: 5'- uGCCUGUccGUugauGGCAucCAUCGCGCGCGAu -3' miRNA: 3'- -UGGACG--CG----CCGUc-GUAGUGCGCGUUu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 27487 | 0.67 | 0.368419 |
Target: 5'- cGCCggGCGCGGUGcGCcagGCGCGCGAc -3' miRNA: 3'- -UGGa-CGCGCCGU-CGuagUGCGCGUUu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 27530 | 0.66 | 0.424173 |
Target: 5'- uGCgUGCGCGGCgcgcuGGCAUaccaGCGC-CAGGg -3' miRNA: 3'- -UGgACGCGCCG-----UCGUAg---UGCGcGUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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