Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26635 | 5' | -58.6 | NC_005808.1 | + | 326 | 0.72 | 0.150135 |
Target: 5'- uACCgucagGCugGCGGUGGCGUCGCGCaGCAGg -3' miRNA: 3'- -UGGa----CG--CGCCGUCGUAGUGCG-CGUUu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 454 | 0.68 | 0.287223 |
Target: 5'- -gCUGCGCGGcCAGCuugCGgGCGCu-- -3' miRNA: 3'- ugGACGCGCC-GUCGua-GUgCGCGuuu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 1036 | 0.7 | 0.209186 |
Target: 5'- gGCCacgGCcgGCGGCAGCAUguCGcCGCGAAc -3' miRNA: 3'- -UGGa--CG--CGCCGUCGUAguGC-GCGUUU- -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 1102 | 0.67 | 0.368419 |
Target: 5'- gGCCgUGuCGC-GCGGCAUguCGCGCAu- -3' miRNA: 3'- -UGG-AC-GCGcCGUCGUAguGCGCGUuu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 1361 | 0.67 | 0.325949 |
Target: 5'- cGCCcuggGCGCGGCGGUGUgGgCGgGCAu- -3' miRNA: 3'- -UGGa---CGCGCCGUCGUAgU-GCgCGUuu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 1738 | 1.05 | 0.000491 |
Target: 5'- uACCUGCGCGGCAGCAUCACGCGCAAAc -3' miRNA: 3'- -UGGACGCGCCGUCGUAGUGCGCGUUU- -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 1883 | 0.69 | 0.272778 |
Target: 5'- cGCCU-CGUGGUcGgGUCAUGCGCAAu -3' miRNA: 3'- -UGGAcGCGCCGuCgUAGUGCGCGUUu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 2214 | 0.67 | 0.34249 |
Target: 5'- cCCU-CGUcgGGUAGCAcCACGCGCAGc -3' miRNA: 3'- uGGAcGCG--CCGUCGUaGUGCGCGUUu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 2369 | 0.68 | 0.302264 |
Target: 5'- gGCCUGCacGUGGCAGaCGccCGCGUGCGu- -3' miRNA: 3'- -UGGACG--CGCCGUC-GUa-GUGCGCGUuu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 3108 | 0.67 | 0.359628 |
Target: 5'- gACCUGaUGCGGCGuCAUaGCGUGCGGu -3' miRNA: 3'- -UGGAC-GCGCCGUcGUAgUGCGCGUUu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 4118 | 0.75 | 0.089608 |
Target: 5'- aGCCUGCGCuGCAGCGUUGCuucccgGCGCAu- -3' miRNA: 3'- -UGGACGCGcCGUCGUAGUG------CGCGUuu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 5578 | 0.67 | 0.367533 |
Target: 5'- gGCCgGCGUguccuacgacuuuGGCAGCAUCGC-CGUAc- -3' miRNA: 3'- -UGGaCGCG-------------CCGUCGUAGUGcGCGUuu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 6342 | 0.67 | 0.359628 |
Target: 5'- gACCUGUuCGGCcuGCccaGCGCGCAGAu -3' miRNA: 3'- -UGGACGcGCCGu-CGuagUGCGCGUUU- -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 6809 | 0.67 | 0.359628 |
Target: 5'- gACCUuuccgcuauugaGCGCGGCGGCccaGCGCaGCGGc -3' miRNA: 3'- -UGGA------------CGCGCCGUCGuagUGCG-CGUUu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 7311 | 0.71 | 0.19119 |
Target: 5'- gACCUGgGCGGCcGaCAUCGCcgagggugagcgcgGCGCAGAu -3' miRNA: 3'- -UGGACgCGCCGuC-GUAGUG--------------CGCGUUU- -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 8120 | 0.68 | 0.279927 |
Target: 5'- cACC-GCGCGGcCGGCGUUgguuguggGCGUGCGGGu -3' miRNA: 3'- -UGGaCGCGCC-GUCGUAG--------UGCGCGUUU- -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 8258 | 0.74 | 0.109439 |
Target: 5'- gGCCgUGCGCgaugaaaucgccGGCAGCAUCcgggcgcACGCGCAGGg -3' miRNA: 3'- -UGG-ACGCG------------CCGUCGUAG-------UGCGCGUUU- -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 8654 | 0.73 | 0.141903 |
Target: 5'- gGCCUucaucGCGCGGuCGGCAUUGCGUGCc-- -3' miRNA: 3'- -UGGA-----CGCGCC-GUCGUAGUGCGCGuuu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 9202 | 0.7 | 0.226796 |
Target: 5'- gGCCUGCuCGGCGGCG-CG-GCGCAc- -3' miRNA: 3'- -UGGACGcGCCGUCGUaGUgCGCGUuu -5' |
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26635 | 5' | -58.6 | NC_005808.1 | + | 9628 | 0.66 | 0.424173 |
Target: 5'- gGCCUucaaGuCGCGGUacacguugAGCAgcCACGCGCGGAa -3' miRNA: 3'- -UGGA----C-GCGCCG--------UCGUa-GUGCGCGUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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