miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26635 5' -58.6 NC_005808.1 + 40897 0.67 0.350985
Target:  5'- gGCCUGCGCcuGGC-GCGUCGgGC-CGAu -3'
miRNA:   3'- -UGGACGCG--CCGuCGUAGUgCGcGUUu -5'
26635 5' -58.6 NC_005808.1 + 39823 0.66 0.411667
Target:  5'- cACCUGCGCaacgucgaggugucGGCAGUGgucggCACGCcCGAGc -3'
miRNA:   3'- -UGGACGCG--------------CCGUCGUa----GUGCGcGUUU- -5'
26635 5' -58.6 NC_005808.1 + 37464 0.72 0.163298
Target:  5'- cGCCUGCGCGGCAcguuGCAguUCAacgGCGCc-- -3'
miRNA:   3'- -UGGACGCGCCGU----CGU--AGUg--CGCGuuu -5'
26635 5' -58.6 NC_005808.1 + 37131 0.68 0.287223
Target:  5'- uCCagGC-CGGCAGCuucuggucaAUCACGCGCAu- -3'
miRNA:   3'- uGGa-CGcGCCGUCG---------UAGUGCGCGUuu -5'
26635 5' -58.6 NC_005808.1 + 36179 0.67 0.368419
Target:  5'- cGCC-GCGCaGGCccGCAuUCACGCGCu-- -3'
miRNA:   3'- -UGGaCGCG-CCGu-CGU-AGUGCGCGuuu -5'
26635 5' -58.6 NC_005808.1 + 36160 0.67 0.350985
Target:  5'- cGCCUucgcGgGCGGUGGUGUCGCGaGCGAGg -3'
miRNA:   3'- -UGGA----CgCGCCGUCGUAGUGCgCGUUU- -5'
26635 5' -58.6 NC_005808.1 + 36125 0.79 0.051191
Target:  5'- gGCCUGCGCGGCGuGCAguUCcUGCGCGAc -3'
miRNA:   3'- -UGGACGCGCCGU-CGU--AGuGCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 35963 0.7 0.23294
Target:  5'- aACCUGUacguguccGCGcGCAGCGcCACGCGCc-- -3'
miRNA:   3'- -UGGACG--------CGC-CGUCGUaGUGCGCGuuu -5'
26635 5' -58.6 NC_005808.1 + 35566 0.66 0.386438
Target:  5'- cGCCUGCuGCaacaGGCGGCAcaaacgcccaUCACGCGa--- -3'
miRNA:   3'- -UGGACG-CG----CCGUCGU----------AGUGCGCguuu -5'
26635 5' -58.6 NC_005808.1 + 34237 0.66 0.38919
Target:  5'- uCgaGCGCGGCggcgcaggagguacuGGCAUgagcacgCACGCGCAAc -3'
miRNA:   3'- uGgaCGCGCCG---------------UCGUA-------GUGCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 34105 0.7 0.226796
Target:  5'- cGCCgaugGCG-GGCAGCGaCAgGCGCGAc -3'
miRNA:   3'- -UGGa---CGCgCCGUCGUaGUgCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 33908 0.71 0.18246
Target:  5'- aAUCUGCGCGGC-GCAcaccuggGCGCGCAGc -3'
miRNA:   3'- -UGGACGCGCCGuCGUag-----UGCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 32402 0.66 0.395663
Target:  5'- gACCUGgGCGGCGGuUGUCGgGaCGCc-- -3'
miRNA:   3'- -UGGACgCGCCGUC-GUAGUgC-GCGuuu -5'
26635 5' -58.6 NC_005808.1 + 30431 0.68 0.287223
Target:  5'- cCCUacaGCaGCGGCGGguUCuCGCGCGAc -3'
miRNA:   3'- uGGA---CG-CGCCGUCguAGuGCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 28620 0.66 0.395663
Target:  5'- aACCggGCGCGGaugaggccggcCAGUucCGCGCGCAGu -3'
miRNA:   3'- -UGGa-CGCGCC-----------GUCGuaGUGCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 27904 0.7 0.203031
Target:  5'- aGCagcgGCGCGGCcggcgccaccgcgGGCAgCGCGCGCGAGg -3'
miRNA:   3'- -UGga--CGCGCCG-------------UCGUaGUGCGCGUUU- -5'
26635 5' -58.6 NC_005808.1 + 27862 0.68 0.302264
Target:  5'- gACgUGCuGCGGCuGCGcggCGCGCGCu-- -3'
miRNA:   3'- -UGgACG-CGCCGuCGUa--GUGCGCGuuu -5'
26635 5' -58.6 NC_005808.1 + 27800 0.68 0.287223
Target:  5'- cGCC-GCGCagccGCAGCAcguccUCGCGCGCGc- -3'
miRNA:   3'- -UGGaCGCGc---CGUCGU-----AGUGCGCGUuu -5'
26635 5' -58.6 NC_005808.1 + 27641 0.68 0.294669
Target:  5'- cGCCUGCuGCcGguGCccuUUACGCGCAAc -3'
miRNA:   3'- -UGGACG-CGcCguCGu--AGUGCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 27530 0.66 0.424173
Target:  5'- uGCgUGCGCGGCgcgcuGGCAUaccaGCGC-CAGGg -3'
miRNA:   3'- -UGgACGCGCCG-----UCGUAg---UGCGcGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.