miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26635 5' -58.6 NC_005808.1 + 27487 0.67 0.368419
Target:  5'- cGCCggGCGCGGUGcGCcagGCGCGCGAc -3'
miRNA:   3'- -UGGa-CGCGCCGU-CGuagUGCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 26366 0.66 0.377356
Target:  5'- uGCCUGUccGUugauGGCAucCAUCGCGCGCGAu -3'
miRNA:   3'- -UGGACG--CG----CCGUc-GUAGUGCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 26273 0.76 0.087033
Target:  5'- gGCCUG-GuCGGCucgcGCAUCGCGCGCGAu -3'
miRNA:   3'- -UGGACgC-GCCGu---CGUAGUGCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 26117 0.66 0.418373
Target:  5'- cGCCaUGCcggcauguguucgucGCGGCAG-AUUugGCGCAGc -3'
miRNA:   3'- -UGG-ACG---------------CGCCGUCgUAGugCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 26046 0.68 0.310009
Target:  5'- aGCCcGCGCGGCGgGCGcgcucCAUGCGCu-- -3'
miRNA:   3'- -UGGaCGCGCCGU-CGUa----GUGCGCGuuu -5'
26635 5' -58.6 NC_005808.1 + 25768 0.67 0.325949
Target:  5'- -gCUGgGCGGCGGCAaCgauggccgcgauGCGCGCGGc -3'
miRNA:   3'- ugGACgCGCCGUCGUaG------------UGCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 22617 0.66 0.376456
Target:  5'- cGCCccgcGCGCGGCAGCAgguagUCGCugauuuccuuccaGUGCGAc -3'
miRNA:   3'- -UGGa---CGCGCCGUCGU-----AGUG-------------CGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 22487 0.7 0.214921
Target:  5'- cGCCgucaagGCGUGGCuGGCGaacgUCACGCGCu-- -3'
miRNA:   3'- -UGGa-----CGCGCCG-UCGU----AGUGCGCGuuu -5'
26635 5' -58.6 NC_005808.1 + 17754 0.66 0.405029
Target:  5'- aACCccagGUGUGcaguucgaGCAGCgaGUCGCGCGCGAAc -3'
miRNA:   3'- -UGGa---CGCGC--------CGUCG--UAGUGCGCGUUU- -5'
26635 5' -58.6 NC_005808.1 + 17368 0.68 0.279927
Target:  5'- cGCCUGCGacaGGUAugccuGCAUCGCGC-CGAc -3'
miRNA:   3'- -UGGACGCg--CCGU-----CGUAGUGCGcGUUu -5'
26635 5' -58.6 NC_005808.1 + 16128 0.73 0.137944
Target:  5'- cGCCgcGCGCGGCGGC--CACGUGCGc- -3'
miRNA:   3'- -UGGa-CGCGCCGUCGuaGUGCGCGUuu -5'
26635 5' -58.6 NC_005808.1 + 15658 0.67 0.325949
Target:  5'- gGCCgaugGCGCGGU-GCAUCcGCaGCGCGu- -3'
miRNA:   3'- -UGGa---CGCGCCGuCGUAG-UG-CGCGUuu -5'
26635 5' -58.6 NC_005808.1 + 14725 0.69 0.239222
Target:  5'- cCCUGCGCccGGUAGCcccaggcagUACGCGCAGc -3'
miRNA:   3'- uGGACGCG--CCGUCGua-------GUGCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 14231 0.69 0.258922
Target:  5'- uCCUugGCGCGGUuaaguGCGUCguccACGCGCAAc -3'
miRNA:   3'- uGGA--CGCGCCGu----CGUAG----UGCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 13448 0.66 0.414533
Target:  5'- cGCCaGCuuGGCGGCcUCGgGCGCGGu -3'
miRNA:   3'- -UGGaCGcgCCGUCGuAGUgCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 12678 0.71 0.192768
Target:  5'- uGCCgaGCGCGuCGGCGcCAUGCGCAAAu -3'
miRNA:   3'- -UGGa-CGCGCcGUCGUaGUGCGCGUUU- -5'
26635 5' -58.6 NC_005808.1 + 12211 0.67 0.363127
Target:  5'- cGCCUacgcggaagcgcagcGCGUGGC-GCGUCGCGC-CAAc -3'
miRNA:   3'- -UGGA---------------CGCGCCGuCGUAGUGCGcGUUu -5'
26635 5' -58.6 NC_005808.1 + 11492 0.66 0.395663
Target:  5'- cGCCUGCGacaccgcaaagGGCAGCGccugcgCugGCGUGAGg -3'
miRNA:   3'- -UGGACGCg----------CCGUCGUa-----GugCGCGUUU- -5'
26635 5' -58.6 NC_005808.1 + 10864 0.67 0.325138
Target:  5'- cCCUGCGUGGCuucggucGGCGcgaUGCGCGCGGc -3'
miRNA:   3'- uGGACGCGCCG-------UCGUa--GUGCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 9628 0.66 0.424173
Target:  5'- gGCCUucaaGuCGCGGUacacguugAGCAgcCACGCGCGGAa -3'
miRNA:   3'- -UGGA----C-GCGCCG--------UCGUa-GUGCGCGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.