miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26635 5' -58.6 NC_005808.1 + 2214 0.67 0.34249
Target:  5'- cCCU-CGUcgGGUAGCAcCACGCGCAGc -3'
miRNA:   3'- uGGAcGCG--CCGUCGUaGUGCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 8120 0.68 0.279927
Target:  5'- cACC-GCGCGGcCGGCGUUgguuguggGCGUGCGGGu -3'
miRNA:   3'- -UGGaCGCGCC-GUCGUAG--------UGCGCGUUU- -5'
26635 5' -58.6 NC_005808.1 + 17368 0.68 0.279927
Target:  5'- cGCCUGCGacaGGUAugccuGCAUCGCGC-CGAc -3'
miRNA:   3'- -UGGACGCg--CCGU-----CGUAGUGCGcGUUu -5'
26635 5' -58.6 NC_005808.1 + 454 0.68 0.287223
Target:  5'- -gCUGCGCGGcCAGCuugCGgGCGCu-- -3'
miRNA:   3'- ugGACGCGCC-GUCGua-GUgCGCGuuu -5'
26635 5' -58.6 NC_005808.1 + 27800 0.68 0.287223
Target:  5'- cGCC-GCGCagccGCAGCAcguccUCGCGCGCGc- -3'
miRNA:   3'- -UGGaCGCGc---CGUCGU-----AGUGCGCGUuu -5'
26635 5' -58.6 NC_005808.1 + 2369 0.68 0.302264
Target:  5'- gGCCUGCacGUGGCAGaCGccCGCGUGCGu- -3'
miRNA:   3'- -UGGACG--CGCCGUC-GUa-GUGCGCGUuu -5'
26635 5' -58.6 NC_005808.1 + 26046 0.68 0.310009
Target:  5'- aGCCcGCGCGGCGgGCGcgcucCAUGCGCu-- -3'
miRNA:   3'- -UGGaCGCGCCGU-CGUa----GUGCGCGuuu -5'
26635 5' -58.6 NC_005808.1 + 10864 0.67 0.325138
Target:  5'- cCCUGCGUGGCuucggucGGCGcgaUGCGCGCGGc -3'
miRNA:   3'- uGGACGCGCCG-------UCGUa--GUGCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 25768 0.67 0.325949
Target:  5'- -gCUGgGCGGCGGCAaCgauggccgcgauGCGCGCGGc -3'
miRNA:   3'- ugGACgCGCCGUCGUaG------------UGCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 14231 0.69 0.258922
Target:  5'- uCCUugGCGCGGUuaaguGCGUCguccACGCGCAAc -3'
miRNA:   3'- uGGA--CGCGCCGu----CGUAG----UGCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 14725 0.69 0.239222
Target:  5'- cCCUGCGCccGGUAGCcccaggcagUACGCGCAGc -3'
miRNA:   3'- uGGACGCG--CCGUCGua-------GUGCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 35963 0.7 0.23294
Target:  5'- aACCUGUacguguccGCGcGCAGCGcCACGCGCc-- -3'
miRNA:   3'- -UGGACG--------CGC-CGUCGUaGUGCGCGuuu -5'
26635 5' -58.6 NC_005808.1 + 26273 0.76 0.087033
Target:  5'- gGCCUG-GuCGGCucgcGCAUCGCGCGCGAu -3'
miRNA:   3'- -UGGACgC-GCCGu---CGUAGUGCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 4118 0.75 0.089608
Target:  5'- aGCCUGCGCuGCAGCGUUGCuucccgGCGCAu- -3'
miRNA:   3'- -UGGACGCGcCGUCGUAGUG------CGCGUuu -5'
26635 5' -58.6 NC_005808.1 + 8654 0.73 0.141903
Target:  5'- gGCCUucaucGCGCGGuCGGCAUUGCGUGCc-- -3'
miRNA:   3'- -UGGA-----CGCGCC-GUCGUAGUGCGCGuuu -5'
26635 5' -58.6 NC_005808.1 + 326 0.72 0.150135
Target:  5'- uACCgucagGCugGCGGUGGCGUCGCGCaGCAGg -3'
miRNA:   3'- -UGGa----CG--CGCCGUCGUAGUGCG-CGUUu -5'
26635 5' -58.6 NC_005808.1 + 37464 0.72 0.163298
Target:  5'- cGCCUGCGCGGCAcguuGCAguUCAacgGCGCc-- -3'
miRNA:   3'- -UGGACGCGCCGU----CGU--AGUg--CGCGuuu -5'
26635 5' -58.6 NC_005808.1 + 33908 0.71 0.18246
Target:  5'- aAUCUGCGCGGC-GCAcaccuggGCGCGCAGc -3'
miRNA:   3'- -UGGACGCGCCGuCGUag-----UGCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 1036 0.7 0.209186
Target:  5'- gGCCacgGCcgGCGGCAGCAUguCGcCGCGAAc -3'
miRNA:   3'- -UGGa--CG--CGCCGUCGUAguGC-GCGUUU- -5'
26635 5' -58.6 NC_005808.1 + 9202 0.7 0.226796
Target:  5'- gGCCUGCuCGGCGGCG-CG-GCGCAc- -3'
miRNA:   3'- -UGGACGcGCCGUCGUaGUgCGCGUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.