miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26636 3' -57.7 NC_005808.1 + 30576 0.66 0.562658
Target:  5'- aGCUGCGCcaccucGUGCUcaACCuCGACGAc- -3'
miRNA:   3'- -CGACGCGcac---CACGA--UGG-GCUGCUcc -5'
26636 3' -57.7 NC_005808.1 + 31306 0.66 0.562658
Target:  5'- gGCgacCGCGUGGUG--GCCCGGCu-GGa -3'
miRNA:   3'- -CGac-GCGCACCACgaUGGGCUGcuCC- -5'
26636 3' -57.7 NC_005808.1 + 1708 0.66 0.562658
Target:  5'- --cGC-CGUGGgccgGCgugCCGGCGAGGg -3'
miRNA:   3'- cgaCGcGCACCa---CGaugGGCUGCUCC- -5'
26636 3' -57.7 NC_005808.1 + 4811 0.66 0.551954
Target:  5'- cGCUGCGgGau-UGCUGgCCGGCGAcaGGu -3'
miRNA:   3'- -CGACGCgCaccACGAUgGGCUGCU--CC- -5'
26636 3' -57.7 NC_005808.1 + 10650 0.66 0.551953
Target:  5'- gGCUGCGCGccugGGUaCUACgCC--CGAGGc -3'
miRNA:   3'- -CGACGCGCa---CCAcGAUG-GGcuGCUCC- -5'
26636 3' -57.7 NC_005808.1 + 25811 0.66 0.541311
Target:  5'- aGCaGCGCGcccaGcGUGCUGCCgcCGGUGAGGa -3'
miRNA:   3'- -CGaCGCGCa---C-CACGAUGG--GCUGCUCC- -5'
26636 3' -57.7 NC_005808.1 + 7157 0.66 0.530739
Target:  5'- -gUGCGCGUGG-GC-GCgCCGugGguAGGc -3'
miRNA:   3'- cgACGCGCACCaCGaUG-GGCugC--UCC- -5'
26636 3' -57.7 NC_005808.1 + 4124 0.66 0.530739
Target:  5'- cGCUGCaGCGU--UGCUuCCCGGCGcauaguGGa -3'
miRNA:   3'- -CGACG-CGCAccACGAuGGGCUGCu-----CC- -5'
26636 3' -57.7 NC_005808.1 + 8170 0.66 0.520243
Target:  5'- cCUGCGCGUgcgcccGGaUGCUGCC-GGCGAu- -3'
miRNA:   3'- cGACGCGCA------CC-ACGAUGGgCUGCUcc -5'
26636 3' -57.7 NC_005808.1 + 27540 0.66 0.509828
Target:  5'- cCU-CGCGUGGUGCgUGCgCGGCGcgcuGGc -3'
miRNA:   3'- cGAcGCGCACCACG-AUGgGCUGCu---CC- -5'
26636 3' -57.7 NC_005808.1 + 22587 0.67 0.479138
Target:  5'- cGCUGCGCGUGcucGCUGCggggaUGAUGGcGGg -3'
miRNA:   3'- -CGACGCGCACca-CGAUGg----GCUGCU-CC- -5'
26636 3' -57.7 NC_005808.1 + 20687 0.67 0.47813
Target:  5'- -aUGCGCGcacucuaUGG-GCUGgaCGACGAGGc -3'
miRNA:   3'- cgACGCGC-------ACCaCGAUggGCUGCUCC- -5'
26636 3' -57.7 NC_005808.1 + 10603 0.67 0.459189
Target:  5'- cGUUGCGCGUGGcgGCggaaagcgUGgCCGGCGGu- -3'
miRNA:   3'- -CGACGCGCACCa-CG--------AUgGGCUGCUcc -5'
26636 3' -57.7 NC_005808.1 + 5469 0.67 0.449382
Target:  5'- cGCcGgGCGgcgaGGUGUUG-CCGAUGGGGg -3'
miRNA:   3'- -CGaCgCGCa---CCACGAUgGGCUGCUCC- -5'
26636 3' -57.7 NC_005808.1 + 36042 0.67 0.449381
Target:  5'- aGCggGCGCGUGGcGCUGCgCG-CGGa- -3'
miRNA:   3'- -CGa-CGCGCACCaCGAUGgGCuGCUcc -5'
26636 3' -57.7 NC_005808.1 + 1670 0.68 0.439691
Target:  5'- uUUGCGCGUGaUGCUGCC--GCGcAGGu -3'
miRNA:   3'- cGACGCGCACcACGAUGGgcUGC-UCC- -5'
26636 3' -57.7 NC_005808.1 + 30277 0.68 0.43969
Target:  5'- --aGUGCGUGcgcGUGCUcaaGCCCGGCGGc- -3'
miRNA:   3'- cgaCGCGCAC---CACGA---UGGGCUGCUcc -5'
26636 3' -57.7 NC_005808.1 + 27852 0.68 0.43969
Target:  5'- gGCUGCGCGgcgcgcgcuucgUGuacGUGUccgaGCCgGACGAGGg -3'
miRNA:   3'- -CGACGCGC------------AC---CACGa---UGGgCUGCUCC- -5'
26636 3' -57.7 NC_005808.1 + 16644 0.68 0.411352
Target:  5'- --gGUGCa-GGUGCcGgCCGACGAGGg -3'
miRNA:   3'- cgaCGCGcaCCACGaUgGGCUGCUCC- -5'
26636 3' -57.7 NC_005808.1 + 16117 0.69 0.366729
Target:  5'- gGCUGCaCGUcGGUGgc-CCCGACGuAGGa -3'
miRNA:   3'- -CGACGcGCA-CCACgauGGGCUGC-UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.