Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26637 | 3' | -58 | NC_005808.1 | + | 2662 | 1.07 | 0.000504 |
Target: 5'- uACGACCUCGCCAACCUGCUGGCCUUGc -3' miRNA: 3'- -UGCUGGAGCGGUUGGACGACCGGAAC- -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 12086 | 0.82 | 0.034203 |
Target: 5'- -aGACCUCGCCGGCCacggccgcgcUGCUGGCCgacgUGg -3' miRNA: 3'- ugCUGGAGCGGUUGG----------ACGACCGGa---AC- -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 2080 | 0.78 | 0.06739 |
Target: 5'- cGCGACUUCGCCAGCgaGCgccugGGCCUc- -3' miRNA: 3'- -UGCUGGAGCGGUUGgaCGa----CCGGAac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 37924 | 0.78 | 0.071438 |
Target: 5'- cAUGACCUUGCCAAUCUggcGCUGGUCUUu -3' miRNA: 3'- -UGCUGGAGCGGUUGGA---CGACCGGAAc -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 42314 | 0.78 | 0.07795 |
Target: 5'- cACGugCUCGCCGACCauccgggugUGCUuGGCCUg- -3' miRNA: 3'- -UGCugGAGCGGUUGG---------ACGA-CCGGAac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 8695 | 0.74 | 0.138076 |
Target: 5'- gGCGACCUCGCC-ACCgcaGC-GGCCg-- -3' miRNA: 3'- -UGCUGGAGCGGuUGGa--CGaCCGGaac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 4323 | 0.74 | 0.150153 |
Target: 5'- uUGACCUCcacgaugguGCCAGCCuugaUGCUGGCCg-- -3' miRNA: 3'- uGCUGGAG---------CGGUUGG----ACGACCGGaac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 18261 | 0.73 | 0.15873 |
Target: 5'- cACGACCUgCGCCGagaACUUGCcGGCCg-- -3' miRNA: 3'- -UGCUGGA-GCGGU---UGGACGaCCGGaac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 35093 | 0.72 | 0.1976 |
Target: 5'- aACGccauCCUCGgCAACCUGCUGGgCg-- -3' miRNA: 3'- -UGCu---GGAGCgGUUGGACGACCgGaac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 24448 | 0.72 | 0.205202 |
Target: 5'- cGCGGCCUCGgCGacauugacgccgacgACCUGCugcuUGGCCUg- -3' miRNA: 3'- -UGCUGGAGCgGU---------------UGGACG----ACCGGAac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 8541 | 0.72 | 0.208538 |
Target: 5'- cCGACCagaUCGCCAAUCUGCUGGa---- -3' miRNA: 3'- uGCUGG---AGCGGUUGGACGACCggaac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 37601 | 0.72 | 0.208538 |
Target: 5'- -gGACUgCGCCGACCUGCUGuucGCCa-- -3' miRNA: 3'- ugCUGGaGCGGUUGGACGAC---CGGaac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 23910 | 0.71 | 0.219994 |
Target: 5'- -gGGuuUCGCCuGCCUGCUGGUCa-- -3' miRNA: 3'- ugCUggAGCGGuUGGACGACCGGaac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 4382 | 0.71 | 0.219994 |
Target: 5'- gGCGACg--GCCGACUUGUcGGCCUUGa -3' miRNA: 3'- -UGCUGgagCGGUUGGACGaCCGGAAC- -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 10917 | 0.71 | 0.225922 |
Target: 5'- gGCGACCUgccCGCCggUUUGCagGGCCUc- -3' miRNA: 3'- -UGCUGGA---GCGGuuGGACGa-CCGGAac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 35163 | 0.71 | 0.238182 |
Target: 5'- -aGGCCgaaGCCGAaCUGCUGGCCg-- -3' miRNA: 3'- ugCUGGag-CGGUUgGACGACCGGaac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 4704 | 0.71 | 0.238182 |
Target: 5'- cCGAUCUUGCCGAcCCUGCggcagcgcgGGCCa-- -3' miRNA: 3'- uGCUGGAGCGGUU-GGACGa--------CCGGaac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 17197 | 0.71 | 0.238182 |
Target: 5'- aGCGGCCUCGCC-AUCUGCcgcaacuucgUGGUCa-- -3' miRNA: 3'- -UGCUGGAGCGGuUGGACG----------ACCGGaac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 37779 | 0.71 | 0.241968 |
Target: 5'- gACGACggCGCCGGCCccgaccucuacaaGCUGGCCUa- -3' miRNA: 3'- -UGCUGgaGCGGUUGGa------------CGACCGGAac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 28263 | 0.71 | 0.244519 |
Target: 5'- cCGACCUggacaaggCGCCGcACCUGCUGGgCgUGg -3' miRNA: 3'- uGCUGGA--------GCGGU-UGGACGACCgGaAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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