Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26637 | 3' | -58 | NC_005808.1 | + | 480 | 0.7 | 0.285508 |
Target: 5'- uACGGCCgacgaucacCGCCGugCUGCUGGUg--- -3' miRNA: 3'- -UGCUGGa--------GCGGUugGACGACCGgaac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 531 | 0.68 | 0.365483 |
Target: 5'- cCGACCgcgacagCGCCcGCaaGCUGGCCg-- -3' miRNA: 3'- uGCUGGa------GCGGuUGgaCGACCGGaac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 731 | 0.69 | 0.307958 |
Target: 5'- gGCGGCUUUGCCGACaacGCcGGCCa-- -3' miRNA: 3'- -UGCUGGAGCGGUUGga-CGaCCGGaac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 745 | 0.66 | 0.439761 |
Target: 5'- cCGGCCggCGCCGccguaggcgGCCUGgUGGCUa-- -3' miRNA: 3'- uGCUGGa-GCGGU---------UGGACgACCGGaac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 1396 | 0.69 | 0.32366 |
Target: 5'- cACGGCUUCcucgcgcuuGUCGGCCUGgUGGCCg-- -3' miRNA: 3'- -UGCUGGAG---------CGGUUGGACgACCGGaac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 1779 | 0.66 | 0.469753 |
Target: 5'- gACGcCCUCGCCGGCaC-GCcGGCCc-- -3' miRNA: 3'- -UGCuGGAGCGGUUG-GaCGaCCGGaac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 2080 | 0.78 | 0.06739 |
Target: 5'- cGCGACUUCGCCAGCgaGCgccugGGCCUc- -3' miRNA: 3'- -UGCUGGAGCGGUUGgaCGa----CCGGAac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 2300 | 0.69 | 0.292845 |
Target: 5'- cGCGGCCacgCGCC-GCCUGCUGcGCgUg- -3' miRNA: 3'- -UGCUGGa--GCGGuUGGACGAC-CGgAac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 2497 | 0.67 | 0.383226 |
Target: 5'- cCGAUCUUcgagGCCGGCCUGCUG-CCg-- -3' miRNA: 3'- uGCUGGAG----CGGUUGGACGACcGGaac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 2662 | 1.07 | 0.000504 |
Target: 5'- uACGACCUCGCCAACCUGCUGGCCUUGc -3' miRNA: 3'- -UGCUGGAGCGGUUGGACGACCGGAAC- -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 2925 | 0.66 | 0.490317 |
Target: 5'- cAUGGCUcUGCCAACgCUacggcuuggcggGCUGGCCUUu -3' miRNA: 3'- -UGCUGGaGCGGUUG-GA------------CGACCGGAAc -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 4323 | 0.74 | 0.150153 |
Target: 5'- uUGACCUCcacgaugguGCCAGCCuugaUGCUGGCCg-- -3' miRNA: 3'- uGCUGGAG---------CGGUUGG----ACGACCGGaac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 4382 | 0.71 | 0.219994 |
Target: 5'- gGCGACg--GCCGACUUGUcGGCCUUGa -3' miRNA: 3'- -UGCUGgagCGGUUGGACGaCCGGAAC- -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 4704 | 0.71 | 0.238182 |
Target: 5'- cCGAUCUUGCCGAcCCUGCggcagcgcgGGCCa-- -3' miRNA: 3'- uGCUGGAGCGGUU-GGACGa--------CCGGaac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 5570 | 0.66 | 0.449639 |
Target: 5'- uCGACggCGCCAAC--GCUGGCCg-- -3' miRNA: 3'- uGCUGgaGCGGUUGgaCGACCGGaac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 8541 | 0.72 | 0.208538 |
Target: 5'- cCGACCagaUCGCCAAUCUGCUGGa---- -3' miRNA: 3'- uGCUGG---AGCGGUUGGACGACCggaac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 8695 | 0.74 | 0.138076 |
Target: 5'- gGCGACCUCGCC-ACCgcaGC-GGCCg-- -3' miRNA: 3'- -UGCUGGAGCGGuUGGa--CGaCCGGaac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 8917 | 0.7 | 0.271272 |
Target: 5'- gGCGACCgagGCCAACgC-GCUGGCCc-- -3' miRNA: 3'- -UGCUGGag-CGGUUG-GaCGACCGGaac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 10917 | 0.71 | 0.225922 |
Target: 5'- gGCGACCUgccCGCCggUUUGCagGGCCUc- -3' miRNA: 3'- -UGCUGGA---GCGGuuGGACGa-CCGGAac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 11366 | 0.67 | 0.405259 |
Target: 5'- gGCGACCugcUCGCCcggcaccucgguggcGACCUGaugGGCCa-- -3' miRNA: 3'- -UGCUGG---AGCGG---------------UUGGACga-CCGGaac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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