Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26637 | 3' | -58 | NC_005808.1 | + | 12086 | 0.82 | 0.034203 |
Target: 5'- -aGACCUCGCCGGCCacggccgcgcUGCUGGCCgacgUGg -3' miRNA: 3'- ugCUGGAGCGGUUGG----------ACGACCGGa---AC- -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 13034 | 0.66 | 0.43878 |
Target: 5'- gACGGCCUCGUCAucGCgUUGCUugagugcGGCCg-- -3' miRNA: 3'- -UGCUGGAGCGGU--UG-GACGA-------CCGGaac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 13083 | 0.67 | 0.383226 |
Target: 5'- -aGGCCgUCGCCAcuGCgCUGCgcGGCCUg- -3' miRNA: 3'- ugCUGG-AGCGGU--UG-GACGa-CCGGAac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 13443 | 0.66 | 0.469753 |
Target: 5'- -aGGCC-CGCCAGCUUGgC-GGCCUc- -3' miRNA: 3'- ugCUGGaGCGGUUGGAC-GaCCGGAac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 13702 | 0.67 | 0.392309 |
Target: 5'- gACGGCCgCGCCgGACUUGCUG-CCg-- -3' miRNA: 3'- -UGCUGGaGCGG-UUGGACGACcGGaac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 17197 | 0.71 | 0.238182 |
Target: 5'- aGCGGCCUCGCC-AUCUGCcgcaacuucgUGGUCa-- -3' miRNA: 3'- -UGCUGGAGCGGuUGGACG----------ACCGGaac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 18261 | 0.73 | 0.15873 |
Target: 5'- cACGACCUgCGCCGagaACUUGCcGGCCg-- -3' miRNA: 3'- -UGCUGGA-GCGGU---UGGACGaCCGGaac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 18354 | 0.66 | 0.439761 |
Target: 5'- gAUGACCaccuguUUGCCGGCggcgagGUUGGCCUUGc -3' miRNA: 3'- -UGCUGG------AGCGGUUGga----CGACCGGAAC- -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 19995 | 0.68 | 0.356827 |
Target: 5'- cGCGuagaaCUCGCCAACUUGCUcGGCa--- -3' miRNA: 3'- -UGCug---GAGCGGUUGGACGA-CCGgaac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 20217 | 0.7 | 0.285508 |
Target: 5'- aGCGcCCgcgGCCGG-CUGUUGGCCUUGg -3' miRNA: 3'- -UGCuGGag-CGGUUgGACGACCGGAAC- -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 20313 | 0.7 | 0.285508 |
Target: 5'- gGCGGCCggUUGCgAugCggGCUGGCCUUc -3' miRNA: 3'- -UGCUGG--AGCGgUugGa-CGACCGGAAc -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 21177 | 0.7 | 0.278318 |
Target: 5'- cGCGGCCUgcUGCgCGGCCugcUGCUGGUCUg- -3' miRNA: 3'- -UGCUGGA--GCG-GUUGG---ACGACCGGAac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 23003 | 0.67 | 0.420384 |
Target: 5'- --cGCCUgGUCGGCCUGCUGcugcGCCUg- -3' miRNA: 3'- ugcUGGAgCGGUUGGACGAC----CGGAac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 23910 | 0.71 | 0.219994 |
Target: 5'- -gGGuuUCGCCuGCCUGCUGGUCa-- -3' miRNA: 3'- ugCUggAGCGGuUGGACGACCGGaac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 24010 | 0.67 | 0.430008 |
Target: 5'- cCGACCUCGCCGgGCgUGC--GCCUg- -3' miRNA: 3'- uGCUGGAGCGGU-UGgACGacCGGAac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 24448 | 0.72 | 0.205202 |
Target: 5'- cGCGGCCUCGgCGacauugacgccgacgACCUGCugcuUGGCCUg- -3' miRNA: 3'- -UGCUGGAGCgGU---------------UGGACG----ACCGGAac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 24623 | 0.68 | 0.33995 |
Target: 5'- cCGGCCUCGCCAucGCCgcGCUGcGCg--- -3' miRNA: 3'- uGCUGGAGCGGU--UGGa-CGAC-CGgaac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 24748 | 0.67 | 0.417522 |
Target: 5'- cGCGGCCUCGaCCcaugcugucggaauGACCUGCcacgGGUCg-- -3' miRNA: 3'- -UGCUGGAGC-GG--------------UUGGACGa---CCGGaac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 27662 | 0.7 | 0.285508 |
Target: 5'- gACGACCaCGCCAucuggcgccGCCUGCUG-CCg-- -3' miRNA: 3'- -UGCUGGaGCGGU---------UGGACGACcGGaac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 28263 | 0.71 | 0.244519 |
Target: 5'- cCGACCUggacaaggCGCCGcACCUGCUGGgCgUGg -3' miRNA: 3'- uGCUGGA--------GCGGU-UGGACGACCgGaAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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