Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26637 | 3' | -58 | NC_005808.1 | + | 2497 | 0.67 | 0.383226 |
Target: 5'- cCGAUCUUcgagGCCGGCCUGCUG-CCg-- -3' miRNA: 3'- uGCUGGAG----CGGUUGGACGACcGGaac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 13083 | 0.67 | 0.383226 |
Target: 5'- -aGGCCgUCGCCAcuGCgCUGCgcGGCCUg- -3' miRNA: 3'- ugCUGG-AGCGGU--UG-GACGa-CCGGAac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 34968 | 0.68 | 0.374283 |
Target: 5'- uUGACCUCGgCGGCCgGCUuGCCg-- -3' miRNA: 3'- uGCUGGAGCgGUUGGaCGAcCGGaac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 531 | 0.68 | 0.365483 |
Target: 5'- cCGACCgcgacagCGCCcGCaaGCUGGCCg-- -3' miRNA: 3'- uGCUGGa------GCGGuUGgaCGACCGGaac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 19995 | 0.68 | 0.356827 |
Target: 5'- cGCGuagaaCUCGCCAACUUGCUcGGCa--- -3' miRNA: 3'- -UGCug---GAGCGGUUGGACGA-CCGgaac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 24623 | 0.68 | 0.33995 |
Target: 5'- cCGGCCUCGCCAucGCCgcGCUGcGCg--- -3' miRNA: 3'- uGCUGGAGCGGU--UGGa-CGAC-CGgaac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 1396 | 0.69 | 0.32366 |
Target: 5'- cACGGCUUCcucgcgcuuGUCGGCCUGgUGGCCg-- -3' miRNA: 3'- -UGCUGGAG---------CGGUUGGACgACCGGaac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 731 | 0.69 | 0.307958 |
Target: 5'- gGCGGCUUUGCCGACaacGCcGGCCa-- -3' miRNA: 3'- -UGCUGGAGCGGUUGga-CGaCCGGaac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 2300 | 0.69 | 0.292845 |
Target: 5'- cGCGGCCacgCGCC-GCCUGCUGcGCgUg- -3' miRNA: 3'- -UGCUGGa--GCGGuUGGACGAC-CGgAac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 27662 | 0.7 | 0.285508 |
Target: 5'- gACGACCaCGCCAucuggcgccGCCUGCUG-CCg-- -3' miRNA: 3'- -UGCUGGaGCGGU---------UGGACGACcGGaac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 34362 | 0.7 | 0.285508 |
Target: 5'- aGCGACUUCGCCGACgaggGCacGGCCg-- -3' miRNA: 3'- -UGCUGGAGCGGUUGga--CGa-CCGGaac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 20313 | 0.7 | 0.285508 |
Target: 5'- gGCGGCCggUUGCgAugCggGCUGGCCUUc -3' miRNA: 3'- -UGCUGG--AGCGgUugGa-CGACCGGAAc -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 20217 | 0.7 | 0.285508 |
Target: 5'- aGCGcCCgcgGCCGG-CUGUUGGCCUUGg -3' miRNA: 3'- -UGCuGGag-CGGUUgGACGACCGGAAC- -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 480 | 0.7 | 0.285508 |
Target: 5'- uACGGCCgacgaucacCGCCGugCUGCUGGUg--- -3' miRNA: 3'- -UGCUGGa--------GCGGUugGACGACCGgaac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 21177 | 0.7 | 0.278318 |
Target: 5'- cGCGGCCUgcUGCgCGGCCugcUGCUGGUCUg- -3' miRNA: 3'- -UGCUGGA--GCG-GUUGG---ACGACCGGAac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 8917 | 0.7 | 0.271272 |
Target: 5'- gGCGACCgagGCCAACgC-GCUGGCCc-- -3' miRNA: 3'- -UGCUGGag-CGGUUG-GaCGACCGGaac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 28673 | 0.7 | 0.250995 |
Target: 5'- gGCGGCCUCGCCAGCgCgGC-GcGCCa-- -3' miRNA: 3'- -UGCUGGAGCGGUUG-GaCGaC-CGGaac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 28263 | 0.71 | 0.244519 |
Target: 5'- cCGACCUggacaaggCGCCGcACCUGCUGGgCgUGg -3' miRNA: 3'- uGCUGGA--------GCGGU-UGGACGACCgGaAC- -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 37779 | 0.71 | 0.241968 |
Target: 5'- gACGACggCGCCGGCCccgaccucuacaaGCUGGCCUa- -3' miRNA: 3'- -UGCUGgaGCGGUUGGa------------CGACCGGAac -5' |
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26637 | 3' | -58 | NC_005808.1 | + | 17197 | 0.71 | 0.238182 |
Target: 5'- aGCGGCCUCGCC-AUCUGCcgcaacuucgUGGUCa-- -3' miRNA: 3'- -UGCUGGAGCGGuUGGACG----------ACCGGaac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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