miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26637 3' -58 NC_005808.1 + 2497 0.67 0.383226
Target:  5'- cCGAUCUUcgagGCCGGCCUGCUG-CCg-- -3'
miRNA:   3'- uGCUGGAG----CGGUUGGACGACcGGaac -5'
26637 3' -58 NC_005808.1 + 13083 0.67 0.383226
Target:  5'- -aGGCCgUCGCCAcuGCgCUGCgcGGCCUg- -3'
miRNA:   3'- ugCUGG-AGCGGU--UG-GACGa-CCGGAac -5'
26637 3' -58 NC_005808.1 + 34968 0.68 0.374283
Target:  5'- uUGACCUCGgCGGCCgGCUuGCCg-- -3'
miRNA:   3'- uGCUGGAGCgGUUGGaCGAcCGGaac -5'
26637 3' -58 NC_005808.1 + 531 0.68 0.365483
Target:  5'- cCGACCgcgacagCGCCcGCaaGCUGGCCg-- -3'
miRNA:   3'- uGCUGGa------GCGGuUGgaCGACCGGaac -5'
26637 3' -58 NC_005808.1 + 19995 0.68 0.356827
Target:  5'- cGCGuagaaCUCGCCAACUUGCUcGGCa--- -3'
miRNA:   3'- -UGCug---GAGCGGUUGGACGA-CCGgaac -5'
26637 3' -58 NC_005808.1 + 24623 0.68 0.33995
Target:  5'- cCGGCCUCGCCAucGCCgcGCUGcGCg--- -3'
miRNA:   3'- uGCUGGAGCGGU--UGGa-CGAC-CGgaac -5'
26637 3' -58 NC_005808.1 + 1396 0.69 0.32366
Target:  5'- cACGGCUUCcucgcgcuuGUCGGCCUGgUGGCCg-- -3'
miRNA:   3'- -UGCUGGAG---------CGGUUGGACgACCGGaac -5'
26637 3' -58 NC_005808.1 + 731 0.69 0.307958
Target:  5'- gGCGGCUUUGCCGACaacGCcGGCCa-- -3'
miRNA:   3'- -UGCUGGAGCGGUUGga-CGaCCGGaac -5'
26637 3' -58 NC_005808.1 + 2300 0.69 0.292845
Target:  5'- cGCGGCCacgCGCC-GCCUGCUGcGCgUg- -3'
miRNA:   3'- -UGCUGGa--GCGGuUGGACGAC-CGgAac -5'
26637 3' -58 NC_005808.1 + 27662 0.7 0.285508
Target:  5'- gACGACCaCGCCAucuggcgccGCCUGCUG-CCg-- -3'
miRNA:   3'- -UGCUGGaGCGGU---------UGGACGACcGGaac -5'
26637 3' -58 NC_005808.1 + 34362 0.7 0.285508
Target:  5'- aGCGACUUCGCCGACgaggGCacGGCCg-- -3'
miRNA:   3'- -UGCUGGAGCGGUUGga--CGa-CCGGaac -5'
26637 3' -58 NC_005808.1 + 20313 0.7 0.285508
Target:  5'- gGCGGCCggUUGCgAugCggGCUGGCCUUc -3'
miRNA:   3'- -UGCUGG--AGCGgUugGa-CGACCGGAAc -5'
26637 3' -58 NC_005808.1 + 20217 0.7 0.285508
Target:  5'- aGCGcCCgcgGCCGG-CUGUUGGCCUUGg -3'
miRNA:   3'- -UGCuGGag-CGGUUgGACGACCGGAAC- -5'
26637 3' -58 NC_005808.1 + 480 0.7 0.285508
Target:  5'- uACGGCCgacgaucacCGCCGugCUGCUGGUg--- -3'
miRNA:   3'- -UGCUGGa--------GCGGUugGACGACCGgaac -5'
26637 3' -58 NC_005808.1 + 21177 0.7 0.278318
Target:  5'- cGCGGCCUgcUGCgCGGCCugcUGCUGGUCUg- -3'
miRNA:   3'- -UGCUGGA--GCG-GUUGG---ACGACCGGAac -5'
26637 3' -58 NC_005808.1 + 8917 0.7 0.271272
Target:  5'- gGCGACCgagGCCAACgC-GCUGGCCc-- -3'
miRNA:   3'- -UGCUGGag-CGGUUG-GaCGACCGGaac -5'
26637 3' -58 NC_005808.1 + 28673 0.7 0.250995
Target:  5'- gGCGGCCUCGCCAGCgCgGC-GcGCCa-- -3'
miRNA:   3'- -UGCUGGAGCGGUUG-GaCGaC-CGGaac -5'
26637 3' -58 NC_005808.1 + 28263 0.71 0.244519
Target:  5'- cCGACCUggacaaggCGCCGcACCUGCUGGgCgUGg -3'
miRNA:   3'- uGCUGGA--------GCGGU-UGGACGACCgGaAC- -5'
26637 3' -58 NC_005808.1 + 37779 0.71 0.241968
Target:  5'- gACGACggCGCCGGCCccgaccucuacaaGCUGGCCUa- -3'
miRNA:   3'- -UGCUGgaGCGGUUGGa------------CGACCGGAac -5'
26637 3' -58 NC_005808.1 + 17197 0.71 0.238182
Target:  5'- aGCGGCCUCGCC-AUCUGCcgcaacuucgUGGUCa-- -3'
miRNA:   3'- -UGCUGGAGCGGuUGGACG----------ACCGGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.