miRNA display CGI


Results 41 - 60 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26637 5' -51.6 NC_005808.1 + 24800 0.69 0.65184
Target:  5'- gUCGAGGCCGcGCA------GGCGCGGu -3'
miRNA:   3'- gAGUUUCGGC-CGUuaaugcUCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 25387 0.66 0.851537
Target:  5'- -aCAAucCCGGCG---ACGAGCGCcGGu -3'
miRNA:   3'- gaGUUucGGCCGUuaaUGCUCGCG-CC- -5'
26637 5' -51.6 NC_005808.1 + 25569 0.67 0.804501
Target:  5'- cCUCAucGCgGGCcugacccugaccAAgcACGAGCGCGc -3'
miRNA:   3'- -GAGUuuCGgCCG------------UUaaUGCUCGCGCc -5'
26637 5' -51.6 NC_005808.1 + 26041 0.75 0.356532
Target:  5'- aUCAAAGCCcGCGcg-GCGGGCGCGc -3'
miRNA:   3'- gAGUUUCGGcCGUuaaUGCUCGCGCc -5'
26637 5' -51.6 NC_005808.1 + 27501 0.71 0.549338
Target:  5'- -cCAGGGCCuGCGGccgcCGGGCGCGGu -3'
miRNA:   3'- gaGUUUCGGcCGUUaau-GCUCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 27549 0.7 0.638091
Target:  5'- -----cGCCGGCAuccucgcguggUGCGuGCGCGGc -3'
miRNA:   3'- gaguuuCGGCCGUua---------AUGCuCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 27824 0.66 0.860236
Target:  5'- gUCcGAGCCGGaCGAgggcaGCGAguuGCGCGa -3'
miRNA:   3'- gAGuUUCGGCC-GUUaa---UGCU---CGCGCc -5'
26637 5' -51.6 NC_005808.1 + 27941 0.68 0.752586
Target:  5'- ---cGAGCaCGcCAAgaugGCGAGCGCGGa -3'
miRNA:   3'- gaguUUCG-GCcGUUaa--UGCUCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 28211 0.67 0.814346
Target:  5'- gUCcAGGUCGGCcacgccgACGAccacGCGCGGg -3'
miRNA:   3'- gAGuUUCGGCCGuuaa---UGCU----CGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 28664 0.71 0.549338
Target:  5'- aUCGGuGCCGGCGGccuCGccAGCGCGGc -3'
miRNA:   3'- gAGUUuCGGCCGUUaauGC--UCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 29256 0.67 0.804501
Target:  5'- aCUCAuaAGGCCGGCcggUGuCGGG-GUGGa -3'
miRNA:   3'- -GAGU--UUCGGCCGuuaAU-GCUCgCGCC- -5'
26637 5' -51.6 NC_005808.1 + 30194 0.67 0.773841
Target:  5'- ---cAGGCCGGCG---GCGuguucuGGCGCGGc -3'
miRNA:   3'- gaguUUCGGCCGUuaaUGC------UCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 30414 0.7 0.594589
Target:  5'- gCUUuc-GCuCGGCAuggcgAUGAGCGCGGg -3'
miRNA:   3'- -GAGuuuCG-GCCGUuaa--UGCUCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 31100 0.82 0.12992
Target:  5'- cCUCGgugcAGGCCGGCGAguggUGCGAGauaGCGGg -3'
miRNA:   3'- -GAGU----UUCGGCCGUUa---AUGCUCg--CGCC- -5'
26637 5' -51.6 NC_005808.1 + 31907 0.67 0.814346
Target:  5'- aUCGAGGCCgagugccugcGGCGuuu-CGAGCGCu- -3'
miRNA:   3'- gAGUUUCGG----------CCGUuaauGCUCGCGcc -5'
26637 5' -51.6 NC_005808.1 + 32135 0.67 0.801509
Target:  5'- -gCGGGGCCGaugagcauggcgucGCAuaguugUGCGAGCGCGc -3'
miRNA:   3'- gaGUUUCGGC--------------CGUua----AUGCUCGCGCc -5'
26637 5' -51.6 NC_005808.1 + 32181 0.68 0.708583
Target:  5'- gUCGAGGUCGGCAGcgGCcAGgGCGu -3'
miRNA:   3'- gAGUUUCGGCCGUUaaUGcUCgCGCc -5'
26637 5' -51.6 NC_005808.1 + 32594 0.78 0.244002
Target:  5'- aUCcuGGCCGGCAucaccagccugcACGGGCGCGGa -3'
miRNA:   3'- gAGuuUCGGCCGUuaa---------UGCUCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 34117 0.67 0.814346
Target:  5'- gCUCGAcAGCCGcGcCGAUgGCGGGCaGCGa -3'
miRNA:   3'- -GAGUU-UCGGC-C-GUUAaUGCUCG-CGCc -5'
26637 5' -51.6 NC_005808.1 + 34213 0.69 0.686041
Target:  5'- -aCGuGGgCGGCGAUUcucgaagauuCGAGCGCGGc -3'
miRNA:   3'- gaGUuUCgGCCGUUAAu---------GCUCGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.