miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26637 5' -51.6 NC_005808.1 + 15179 0.68 0.763287
Target:  5'- gUC-GGGCCugguaGGCAgcuAUUACGGcGCGCGGu -3'
miRNA:   3'- gAGuUUCGG-----CCGU---UAAUGCU-CGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 16496 0.71 0.571857
Target:  5'- uUCAAcgccGCCGGCGAUUACcc-CGCGGc -3'
miRNA:   3'- gAGUUu---CGGCCGUUAAUGcucGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 16647 0.66 0.823983
Target:  5'- -gCAGGuGCCGGCcg--ACGAGggaGCGGa -3'
miRNA:   3'- gaGUUU-CGGCCGuuaaUGCUCg--CGCC- -5'
26637 5' -51.6 NC_005808.1 + 17288 0.81 0.163539
Target:  5'- -aCGAAGCCGGCGcc-GCGGGCGCGc -3'
miRNA:   3'- gaGUUUCGGCCGUuaaUGCUCGCGCc -5'
26637 5' -51.6 NC_005808.1 + 17673 0.68 0.752586
Target:  5'- aUCGAGGCCGGUAu---CGAcaacGCGCa- -3'
miRNA:   3'- gAGUUUCGGCCGUuaauGCU----CGCGcc -5'
26637 5' -51.6 NC_005808.1 + 18219 0.66 0.842589
Target:  5'- -aCAGGGCuauuuCGGCAAgcugcGCGAGC-CGGg -3'
miRNA:   3'- gaGUUUCG-----GCCGUUaa---UGCUCGcGCC- -5'
26637 5' -51.6 NC_005808.1 + 18649 0.75 0.374521
Target:  5'- uCUCGGacGGCCaGGCcGUcaccGCGAGCGCGGc -3'
miRNA:   3'- -GAGUU--UCGG-CCGuUAa---UGCUCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 19244 0.7 0.617459
Target:  5'- aUCGAcGCCGGCGGc-ACGGGCaGCGa -3'
miRNA:   3'- gAGUUuCGGCCGUUaaUGCUCG-CGCc -5'
26637 5' -51.6 NC_005808.1 + 19818 0.68 0.706342
Target:  5'- cCUCGuGGCCGGCAacaacggcaaccAgcccaagcaggGCGAuGCGCGGc -3'
miRNA:   3'- -GAGUuUCGGCCGU------------Uaa---------UGCU-CGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 20280 0.68 0.752586
Target:  5'- -cCAAcAGCCGGCc---GCGGGCGCu- -3'
miRNA:   3'- gaGUU-UCGGCCGuuaaUGCUCGCGcc -5'
26637 5' -51.6 NC_005808.1 + 20309 0.67 0.794461
Target:  5'- gCUCGGcGGCCGGU---UGCGA-UGCGGg -3'
miRNA:   3'- -GAGUU-UCGGCCGuuaAUGCUcGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 20834 0.75 0.347768
Target:  5'- ----cAGCCGcGCGAUgaguCGAGCGCGGc -3'
miRNA:   3'- gaguuUCGGC-CGUUAau--GCUCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 21231 0.68 0.730799
Target:  5'- -gCAgcAGGCCGcGCuGUUGaaccaGGGCGCGGa -3'
miRNA:   3'- gaGU--UUCGGC-CGuUAAUg----CUCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 21808 0.68 0.752586
Target:  5'- -gCGGAcaCCGGCAGUUGC-AGCgGCGGg -3'
miRNA:   3'- gaGUUUc-GGCCGUUAAUGcUCG-CGCC- -5'
26637 5' -51.6 NC_005808.1 + 22322 0.68 0.763287
Target:  5'- gCUgAcGGCCGGCGAaUACGccauCGCGGc -3'
miRNA:   3'- -GAgUuUCGGCCGUUaAUGCuc--GCGCC- -5'
26637 5' -51.6 NC_005808.1 + 23500 0.72 0.483721
Target:  5'- uCUCGAccuG-CGGCAGUUccGCGAGCGCGc -3'
miRNA:   3'- -GAGUUu--CgGCCGUUAA--UGCUCGCGCc -5'
26637 5' -51.6 NC_005808.1 + 23566 0.83 0.10586
Target:  5'- -aCAucGCCGGCAggUGCGGGCGgGGg -3'
miRNA:   3'- gaGUuuCGGCCGUuaAUGCUCGCgCC- -5'
26637 5' -51.6 NC_005808.1 + 23959 0.66 0.842589
Target:  5'- -gCGAGGUCGGCAuUUGcCGAuucauGCGCGu -3'
miRNA:   3'- gaGUUUCGGCCGUuAAU-GCU-----CGCGCc -5'
26637 5' -51.6 NC_005808.1 + 23983 0.71 0.583201
Target:  5'- aUCAcgccuauGCCGGCAuggaagccGCGGGCGUGGc -3'
miRNA:   3'- gAGUuu-----CGGCCGUuaa-----UGCUCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 24309 0.66 0.851537
Target:  5'- --uGAGGUCGGCGAgcagccGCGGGUcagGCGGc -3'
miRNA:   3'- gagUUUCGGCCGUUaa----UGCUCG---CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.