miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26637 5' -51.6 NC_005808.1 + 30414 0.7 0.594589
Target:  5'- gCUUuc-GCuCGGCAuggcgAUGAGCGCGGg -3'
miRNA:   3'- -GAGuuuCG-GCCGUuaa--UGCUCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 19244 0.7 0.617459
Target:  5'- aUCGAcGCCGGCGGc-ACGGGCaGCGa -3'
miRNA:   3'- gAGUUuCGGCCGUUaaUGCUCG-CGCc -5'
26637 5' -51.6 NC_005808.1 + 5272 0.7 0.62892
Target:  5'- cCUCGAcgugggcacgguAGCCGGCAAUaucgACGAcGUGCaGGc -3'
miRNA:   3'- -GAGUU------------UCGGCCGUUAa---UGCU-CGCG-CC- -5'
26637 5' -51.6 NC_005808.1 + 10937 0.7 0.62892
Target:  5'- -gCAGGGCCucgGGCAGUUGCGcGGCGacagcCGGg -3'
miRNA:   3'- gaGUUUCGG---CCGUUAAUGC-UCGC-----GCC- -5'
26637 5' -51.6 NC_005808.1 + 27549 0.7 0.638091
Target:  5'- -----cGCCGGCAuccucgcguggUGCGuGCGCGGc -3'
miRNA:   3'- gaguuuCGGCCGUua---------AUGCuCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 9846 0.7 0.640384
Target:  5'- cCUCGGuuUCGGCGucgAUGAGCGUGGc -3'
miRNA:   3'- -GAGUUucGGCCGUuaaUGCUCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 7082 0.69 0.648404
Target:  5'- aUCAAcGCCaaguccucguucauGGCGAau-CGGGCGCGGa -3'
miRNA:   3'- gAGUUuCGG--------------CCGUUaauGCUCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 24800 0.69 0.65184
Target:  5'- gUCGAGGCCGcGCA------GGCGCGGu -3'
miRNA:   3'- gAGUUUCGGC-CGUuaaugcUCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 40906 0.69 0.663276
Target:  5'- gUCAuGGCCGGCc--UGCGccuGGCGCGu -3'
miRNA:   3'- gAGUuUCGGCCGuuaAUGC---UCGCGCc -5'
26637 5' -51.6 NC_005808.1 + 42422 0.69 0.67468
Target:  5'- -gUAGGGCCGGCGGUaGCGAauccccagGCGCu- -3'
miRNA:   3'- gaGUUUCGGCCGUUAaUGCU--------CGCGcc -5'
26637 5' -51.6 NC_005808.1 + 38206 0.69 0.686041
Target:  5'- gCUCAAGGcCCGGCGcg-ACG-GCGCc- -3'
miRNA:   3'- -GAGUUUC-GGCCGUuaaUGCuCGCGcc -5'
26637 5' -51.6 NC_005808.1 + 34213 0.69 0.686041
Target:  5'- -aCGuGGgCGGCGAUUcucgaagauuCGAGCGCGGc -3'
miRNA:   3'- gaGUuUCgGCCGUUAAu---------GCUCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 36581 0.69 0.697347
Target:  5'- cCUCGAAGUCGu------CGAGCGCGGc -3'
miRNA:   3'- -GAGUUUCGGCcguuaauGCUCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 13601 0.69 0.697347
Target:  5'- gUCAGgcGGCCGaCAGUU-CG-GCGCGGa -3'
miRNA:   3'- gAGUU--UCGGCcGUUAAuGCuCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 19818 0.68 0.706342
Target:  5'- cCUCGuGGCCGGCAacaacggcaaccAgcccaagcaggGCGAuGCGCGGc -3'
miRNA:   3'- -GAGUuUCGGCCGU------------Uaa---------UGCU-CGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 32181 0.68 0.708583
Target:  5'- gUCGAGGUCGGCAGcgGCcAGgGCGu -3'
miRNA:   3'- gAGUUUCGGCCGUUaaUGcUCgCGCc -5'
26637 5' -51.6 NC_005808.1 + 7705 0.68 0.719738
Target:  5'- --aGGAGCCGGCGuggguCGAGcCGCGc -3'
miRNA:   3'- gagUUUCGGCCGUuaau-GCUC-GCGCc -5'
26637 5' -51.6 NC_005808.1 + 21231 0.68 0.730799
Target:  5'- -gCAgcAGGCCGcGCuGUUGaaccaGGGCGCGGa -3'
miRNA:   3'- gaGU--UUCGGC-CGuUAAUg----CUCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 21808 0.68 0.752586
Target:  5'- -gCGGAcaCCGGCAGUUGC-AGCgGCGGg -3'
miRNA:   3'- gaGUUUc-GGCCGUUAAUGcUCG-CGCC- -5'
26637 5' -51.6 NC_005808.1 + 17673 0.68 0.752586
Target:  5'- aUCGAGGCCGGUAu---CGAcaacGCGCa- -3'
miRNA:   3'- gAGUUUCGGCCGUuaauGCU----CGCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.