miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26637 5' -51.6 NC_005808.1 + 35346 0.67 0.794461
Target:  5'- -aCAAGGCCGGCGAcauCGGcccGCGCc- -3'
miRNA:   3'- gaGUUUCGGCCGUUaauGCU---CGCGcc -5'
26637 5' -51.6 NC_005808.1 + 20309 0.67 0.794461
Target:  5'- gCUCGGcGGCCGGU---UGCGA-UGCGGg -3'
miRNA:   3'- -GAGUU-UCGGCCGuuaAUGCUcGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 40366 0.67 0.784237
Target:  5'- -cCAAGGcCCGGCGuUUAUaccgcgacaugGAGCGCGa -3'
miRNA:   3'- gaGUUUC-GGCCGUuAAUG-----------CUCGCGCc -5'
26637 5' -51.6 NC_005808.1 + 9726 0.67 0.81337
Target:  5'- cCUCGAAGCCgcgGGCGAacUGCucgugguGGGCGCGc -3'
miRNA:   3'- -GAGUUUCGG---CCGUUa-AUG-------CUCGCGCc -5'
26637 5' -51.6 NC_005808.1 + 32135 0.67 0.801509
Target:  5'- -gCGGGGCCGaugagcauggcgucGCAuaguugUGCGAGCGCGc -3'
miRNA:   3'- gaGUUUCGGC--------------CGUua----AUGCUCGCGCc -5'
26637 5' -51.6 NC_005808.1 + 4857 0.67 0.794461
Target:  5'- -gCAGcgccAGCCGGCGugcuggGCGcAGUGUGGg -3'
miRNA:   3'- gaGUU----UCGGCCGUuaa---UGC-UCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 12993 0.67 0.784237
Target:  5'- --aGAAGCUGacuaGC-GUUAUGGGCGCGGc -3'
miRNA:   3'- gagUUUCGGC----CGuUAAUGCUCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 30194 0.67 0.773841
Target:  5'- ---cAGGCCGGCG---GCGuguucuGGCGCGGc -3'
miRNA:   3'- gaguUUCGGCCGUuaaUGC------UCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 882 0.67 0.773841
Target:  5'- -cCGAcGuUCGGCAAggGCuGGGCGCGGc -3'
miRNA:   3'- gaGUUuC-GGCCGUUaaUG-CUCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 37352 0.67 0.784237
Target:  5'- gUCGAGGCCGuaGGccGCGAGCacGUGGc -3'
miRNA:   3'- gAGUUUCGGCcgUUaaUGCUCG--CGCC- -5'
26637 5' -51.6 NC_005808.1 + 27941 0.68 0.752586
Target:  5'- ---cGAGCaCGcCAAgaugGCGAGCGCGGa -3'
miRNA:   3'- gaguUUCG-GCcGUUaa--UGCUCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 20280 0.68 0.752586
Target:  5'- -cCAAcAGCCGGCc---GCGGGCGCu- -3'
miRNA:   3'- gaGUU-UCGGCCGuuaaUGCUCGCGcc -5'
26637 5' -51.6 NC_005808.1 + 21231 0.68 0.730799
Target:  5'- -gCAgcAGGCCGcGCuGUUGaaccaGGGCGCGGa -3'
miRNA:   3'- gaGU--UUCGGC-CGuUAAUg----CUCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 17673 0.68 0.752586
Target:  5'- aUCGAGGCCGGUAu---CGAcaacGCGCa- -3'
miRNA:   3'- gAGUUUCGGCCGUuaauGCU----CGCGcc -5'
26637 5' -51.6 NC_005808.1 + 7705 0.68 0.719738
Target:  5'- --aGGAGCCGGCGuggguCGAGcCGCGc -3'
miRNA:   3'- gagUUUCGGCCGUuaau-GCUC-GCGCc -5'
26637 5' -51.6 NC_005808.1 + 19818 0.68 0.706342
Target:  5'- cCUCGuGGCCGGCAacaacggcaaccAgcccaagcaggGCGAuGCGCGGc -3'
miRNA:   3'- -GAGUuUCGGCCGU------------Uaa---------UGCU-CGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 22322 0.68 0.763287
Target:  5'- gCUgAcGGCCGGCGAaUACGccauCGCGGc -3'
miRNA:   3'- -GAgUuUCGGCCGUUaAUGCuc--GCGCC- -5'
26637 5' -51.6 NC_005808.1 + 15179 0.68 0.763287
Target:  5'- gUC-GGGCCugguaGGCAgcuAUUACGGcGCGCGGu -3'
miRNA:   3'- gAGuUUCGG-----CCGU---UAAUGCU-CGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 32181 0.68 0.708583
Target:  5'- gUCGAGGUCGGCAGcgGCcAGgGCGu -3'
miRNA:   3'- gAGUUUCGGCCGUUaaUGcUCgCGCc -5'
26637 5' -51.6 NC_005808.1 + 21808 0.68 0.752586
Target:  5'- -gCGGAcaCCGGCAGUUGC-AGCgGCGGg -3'
miRNA:   3'- gaGUUUc-GGCCGUUAAUGcUCG-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.